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Sed0013578 (gene) of Chayote v1 genome

Gene IDSed0013578
OrganismSechium edule (Chayote v1)
DescriptionDefensin-like protein 3
Genome locationLG04:44922399..44922687
RNA-Seq ExpressionSed0013578
SyntenySed0013578
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHA50469.1 defensin-like protein 3 [Citrullus lanatus]7.5e-1055.88Show/hide
Query:  EGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCDGYCIDGACSCPVPC
        E  RKL  TI++FI L+LASGWM    EGR CYR     KG CSS+ +CI  CDG+C  G+C C VPC
Subjt:  EGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCDGYCIDGACSCPVPC

KAA0062794.1 defensin-like protein 3 [Cucumis melo var. makuwa]1.2e-0438.81Show/hide
Query:  VTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC
        +T + F+ L++ASGWM    EG++C+++    KG C+S +EC++ CD      G C +G C C V C
Subjt:  VTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC

KAA0062795.1 defensin-like protein 3 [Cucumis melo var. makuwa]2.6e-1053.52Show/hide
Query:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYR----RKGACSSENECIRDCDGYCIDGACSCPVPC
        M  EG RKLTV ++  I+L++ASGWM    EGRVC+R     KG CSS+ +CI  CDG+C  G C C VPC
Subjt:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYR----RKGACSSENECIRDCDGYCIDGACSCPVPC

XP_031744629.1 defensin-1-like [Cucumis sativus]8.0e-1257.75Show/hide
Query:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCY----RRKGACSSENECIRDCDGYCIDGACSCPVPC
        M  EG RKLTV  ++FI+L+LASGWM    EGRVCY    R KG CSS ++CI  CDG+C  G C C VPC
Subjt:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCY----RRKGACSSENECIRDCDGYCIDGACSCPVPC

XP_038887289.1 defensin-like protein 2 [Benincasa hispida]1.1e-0849.35Show/hide
Query:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC
        MA EG RKLTV  ++FI LALASGWM    EG+ C+++    +G C+S NEC+  CD      GYC +G C C V C
Subjt:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC

TrEMBL top hitse value%identityAlignment
A0A0A0K447 Uncharacterized protein7.8e-0539.73Show/hide
Query:  GLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDC------DGYCIDGACSCPVPC
        G +KLT    +F +LA+ASGWM     G++C+++    KG C S +EC++ C      DG+C +G C C V C
Subjt:  GLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDC------DGYCIDGACSCPVPC

A0A5A7V3H5 Defensin-like protein 37.8e-0541.03Show/hide
Query:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDC-------DGYCIDGACSCPVPC
        M  EGLRKLTV +++F++   ASGWM    EG  CY+     +G C+S  EC R C       DG+C    C C   C
Subjt:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDC-------DGYCIDGACSCPVPC

A0A5D3BCI9 Defensin-like protein 36.0e-0538.81Show/hide
Query:  VTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC
        +T + F+ L++ASGWM    EG++C+++    KG C+S +EC++ CD      G C +G C C V C
Subjt:  VTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCD------GYCIDGACSCPVPC

A0A5D3BEY4 Defensin-like protein 31.2e-1053.52Show/hide
Query:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYR----RKGACSSENECIRDCDGYCIDGACSCPVPC
        M  EG RKLTV ++  I+L++ASGWM    EGRVC+R     KG CSS+ +CI  CDG+C  G C C VPC
Subjt:  MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYR----RKGACSSENECIRDCDGYCIDGACSCPVPC

W5RQN1 Defensin-like protein 33.6e-1055.88Show/hide
Query:  EGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCDGYCIDGACSCPVPC
        E  RKL  TI++FI L+LASGWM    EGR CYR     KG CSS+ +CI  CDG+C  G+C C VPC
Subjt:  EGLRKLTVTIMMFIILALASGWMATAAEGRVCYRR----KGACSSENECIRDCDGYCIDGACSCPVPC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGAGAAGGATTGAGAAAACTTACAGTAACGATCATGATGTTCATCATCCTAGCCCTAGCTTCTGGATGGATGGCGACGGCGGCGGAAGGTAGGGTTTGCTACCG
GCGGAAGGGAGCGTGTTCGTCGGAGAATGAATGTATAAGGGATTGCGACGGATATTGCATCGATGGAGCTTGCAGTTGTCCAGTGCCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGAGAAGGATTGAGAAAACTTACAGTAACGATCATGATGTTCATCATCCTAGCCCTAGCTTCTGGATGGATGGCGACGGCGGCGGAAGGTAGGGTTTGCTACCG
GCGGAAGGGAGCGTGTTCGTCGGAGAATGAATGTATAAGGGATTGCGACGGATATTGCATCGATGGAGCTTGCAGTTGTCCAGTGCCTTGTTAA
Protein sequenceShow/hide protein sequence
MAREGLRKLTVTIMMFIILALASGWMATAAEGRVCYRRKGACSSENECIRDCDGYCIDGACSCPVPC