CuGenDBv2

Gene ID	Sed0013591
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Genome location	LG06:40481898..40483939
RNA-Seq Expression	Sed0013591
Synteny	Sed0013591
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601405.1 hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-82

83.25

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS     S AKRRRH PP  S  AEDDD+DKP  KPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

4.0e-83

83.25

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS    TS AKRRRH PPA S   EDDD+DKP  KPAPP+ALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

6.2e-84

84.24

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS    TS AKRRRH PPA S  AEDDD+DKP  KPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

1.1e-83

83.74

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Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS    TS AKRRRH PPA S  AEDDD+DKP  KPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLAST+VNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

9.3e-88

86.21

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS+ LPTSVAKRRR PPPAP S  ED+D+DKP SKPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSFAFTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSDVPFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTW9 RRM domain-containing protein

9.7e-83

81.77

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS+ LPTS  KRRR PP     + E+DDL+KP SKPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
         AALDPSFAFTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGR NKLAS IVNPR+S+SSSRSDVPFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

9.7e-83

82.27

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS+ LPTS AKRRR PP     +  DDDL+KP SKPAPPLALVV DLPS CSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
         AALDPSFAFTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGR NKLASTIVNPR+S+SSSRSDVPFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

A0A5D3CUC0 Thaumatin-like protein 1

9.7e-83

82.27

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS+ LPTS AKRRR PP     +  DDDL+KP SKPAPPLALVV DLPS CSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
         AALDPSFAFTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGR NKLASTIVNPR+S+SSSRSDVPFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

A0A6J1GYQ1 uncharacterized protein At1g27050

2.0e-83

83.25

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS    TS AKRRRH PPA S   EDDD+DKP  KPAPP+ALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

A0A6J1KFA1 uncharacterized protein At1g27050

3.0e-84

84.24

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        M RKRDKPYPS    TS AKRRRH PPA S  AEDDD+DKP  KPAPPLALVV DLPSHCSVLDLKSRFEIYGSISRIRIDRDCVG+I +RTK SADAAM
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD
        AAALDPSF FTIDSKK        V+VLWANDPQVQWRQGINVGVNKNKE  SKLLRAEVPLSRHGRGNKLASTIVNPRKS+SSSRSD PFRGREVVAYD
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYD

Query:  DIL
        DIL
Subjt:  DIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

1.7e-47

49.77

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        MSRKRDKPY +   P  ++KRRR  P APSS+  D+ +DKP +KP PP ALVV  LP++CSVL+LKSRFEIYGSISRIRI +D +G +++RT  SA+AA+
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKES--FSKLLRAEVPLSRHGRGNKLASTIVNPRKSD----------SSSRSD
        A + +PSF  +IDSKK        ++V+WA DP V+W++G+  G  K + S   SKLLR  +PL +HGR ++LAS IVNPR  +          SS  + 
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKES--FSKLLRAEVPLSRHGRGNKLASTIVNPRKSD----------SSSRSD

Query:  VPFRGREVVAYDDIL
           + R +V YDDI+
Subjt:  VPFRGREVVAYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

1.2e-48

49.77

Show/hide

Query:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM
        MSRKRDKPY +   P  ++KRRR  P APSS+  D+ +DKP +KP PP ALVV  LP++CSVL+LKSRFEIYGSISRIRI +D +G +++RT  SA+AA+
Subjt:  MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAM

Query:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKES--FSKLLRAEVPLSRHGRGNKLASTIVNPRKSD----------SSSRSD
        A + +PSF  +IDSKK        ++V+WA DP V+W++G+  G  K + S   SKLLR  +PL +HGR ++LAS IVNPR  +          SS  + 
Subjt:  AAALDPSFAFTIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKES--FSKLLRAEVPLSRHGRGNKLASTIVNPRKSD----------SSSRSD

Query:  VPFRGREVVAYDDIL
           + R +V YDDI+
Subjt:  VPFRGREVVAYDDIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCGCCCAACTCCCTACCTCCGTCGCCAAGAGGCGGCGCCATCCGCCTCCGGCACCGTCGTCGGCGGCGGAGGACGATGA
CCTGGACAAGCCCTCGTCGAAGCCGGCGCCGCCGCTTGCCCTAGTCGTCACTGACCTTCCTTCACACTGTTCGGTTCTTGATTTGAAGTCCCGATTTGAGATCTATGGAT
CCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTTTATCAATTTCCGCACCAAACACTCCGCCGATGCTGCCATGGCCGCCGCCCTCGACCCCTCTTTCGCCTTC
ACCATTGATTCCAAGAAGAGATTTTATTCTCTATTTCCACAGGTTAAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTCAACAA
GAATAAGGAGTCGTTCTCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAAGAGTGACAGTT
CTTCAAGGTCGGATGTGCCTTTCAGAGGCAGGGAAGTTGTTGCTTATGATGATATCCTCTAA

mRNA sequence

Show/hide mRNA sequence

CCAAAGTCTGTCGAAGCCGGAGTACAAAAATAATAATAATAAAGACAAAAAGTGAACAAAATTTGGTGTGGATAGAAACTAAACCAAAGTCTGTCGAAGCCGGAGTTGCA
ACTGGGGAATGACCTAAACTTGTTGGCGGCGCTCCAAGAAGCGATGAGTCGCAAGAGAGACAAACCCTACCCTTCCGCCCAACTCCCTACCTCCGTCGCCAAGAGGCGGC
GCCATCCGCCTCCGGCACCGTCGTCGGCGGCGGAGGACGATGACCTGGACAAGCCCTCGTCGAAGCCGGCGCCGCCGCTTGCCCTAGTCGTCACTGACCTTCCTTCACAC
TGTTCGGTTCTTGATTTGAAGTCCCGATTTGAGATCTATGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTTTATCAATTTCCGCACCAAACACTCCGC
CGATGCTGCCATGGCCGCCGCCCTCGACCCCTCTTTCGCCTTCACCATTGATTCCAAGAAGAGATTTTATTCTCTATTTCCACAGGTTAAGGTATTATGGGCGAATGATC
CTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTCAACAAGAATAAGGAGTCGTTCTCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGAAGAGGCAAT
AAGCTTGCTTCAACCATTGTTAACCCCAGAAAGAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGAGGCAGGGAAGTTGTTGCTTATGATGATATCCTCTAA

Protein sequence

Show/hide protein sequence

MSRKRDKPYPSAQLPTSVAKRRRHPPPAPSSAAEDDDLDKPSSKPAPPLALVVTDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGFINFRTKHSADAAMAAALDPSFAF
TIDSKKRFYSLFPQVKVLWANDPQVQWRQGINVGVNKNKESFSKLLRAEVPLSRHGRGNKLASTIVNPRKSDSSSRSDVPFRGREVVAYDDIL

Sed0013591 (gene) of Chayote v1 genome