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Sed0013623 (gene) of Chayote v1 genome

Gene IDSed0013623
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG13:8204784..8206612
RNA-Seq ExpressionSed0013623
SyntenySed0013623
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV60055.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]4.7e-0437.84Show/hide
Query:  DKRVSKMEFGYGDFWIRLHDVPPAGHTDKSARRL--------------GTEKWVRLSYEKLLIFCRGCGRIGHG
        +K ++++EF  G+FWI++HD+P    + + A  L              GTE WV L YE L  FC  CG  GHG
Subjt:  DKRVSKMEFGYGDFWIRLHDVPPAGHTDKSARRL--------------GTEKWVRLSYEKLLIFCRGCGRIGHG
MBA0847410.1 hypothetical protein [Gossypium schwendimanii]3.6e-0440Show/hide
Query:  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRIGHGEN
        +S +   Y +FW+++HD+ P G   ++ R+    LGT +  + R  YEKL +FC  CG++GHGEN
Subjt:  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRIGHGEN
TXG69340.1 hypothetical protein EZV62_004275 [Acer yangbiense]8.1e-0442.42Show/hide
Query:  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGCGRIGHG
        G   +SK+ F   DFW+++HD+P      ++ +  +LG T+K   V L YE+L  FC  CGRIGHG
Subjt:  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGCGRIGHG
TrEMBL top hitse value%identityAlignment
A0A5C7IJ96 CCHC-type domain-containing protein3.9e-0442.42Show/hide
Query:  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGCGRIGHG
        G   +SK+ F   DFW+++HD+P      ++ +  +LG T+K   V L YE+L  FC  CGRIGHG
Subjt:  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGCGRIGHG
A0A7J9KLW8 Uncharacterized protein (Fragment)1.8e-0440Show/hide
Query:  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRIGHGEN
        +S +   Y +FW+++HD+ P G   ++ R+    LGT +  + R  YEKL +FC  CG++GHGEN
Subjt:  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRIGHGEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGGCTCTCTTCGCCCAGATGATGGAGAACCTGGAACTAGGAGACCAAGAAGCTCAAGAAGTTTTTGAGCTTGAAGAAGAGGAGATCTCTGCGTATGAAGGAGA
GCTAAACAATGTTGTTGCTATGGCGGGAGACAAGCGTGTTTCTAAAATGGAATTTGGTTATGGGGATTTCTGGATTAGACTTCACGATGTTCCTCCAGCGGGCCACACAG
ATAAGAGTGCAAGAAGATTGGGAACTGAAAAATGGGTTCGGTTGTCTTATGAAAAGCTCTTGATTTTTTGTCGGGGGTGCGGAAGAATCGGCCATGGTGAAAACCAAGGA
GATTGTGATGTTCCGCTGCTTTTTGGTATAAGAGGGAGGGGCAGGGGAAGAGGCAGAGGAGAGGGGATTCGTGGAGGTGGTGTTCGAGCAGAGGAGGAGGAATTTTCGAT
GGAGAAAAGGAGGGAGGAGGAGAGGCAGAGGGGAAAACCGTCGTCGAATATTCTAGCCGTTTCCGACTTGGCGGGGGATGAGACAAATAGTCAATTGATGAGCAGAGAAA
TTAAAATAGGGAAGGGACATGTGGCAGAAATTAATTGCGACAGGCTGGCTGGGAAGGGGAAAAAGAAATTGCTTGACCAGGGGACGAACGATTTACTCTTTGGGCCTTTT
GAAGTTTGTTTCGGTCATAAAAGTGAGTCAGCTGATTATTTGATTGGGCCTAAAGTTGGGCCGATAAATGGGATTTTTATTAAAGAAGATATAGGTCAACAATTTTCTAT
GCTGGTTTCTGATGATCCAAAGCCAATTGGATATAGGGGCAGACATGGGCCCGATGAAAAGGAAAAAAGGGTTAACAGTTTTTCGGCAGGGCAGGAAGTTGATGTTGTTA
GGCAGATTGTTGCTGAAAATAATGATAAATCGACATGGAGTCATATGGCCGAGAAAAGAGACGTTGTCAAGGTGCCAGAAGAGAGGGAGAGATGTAGAAATCCTAGTAGA
AATGTTTCATCCAAGAATCTTATAGATGATGTATCTAAGATGGATATTGAGATCGAAAAAACAAGGGAATTGGACAAAGAAGTCGGTAGCAGTGGTGGTGGAAAAATTAA
AAGCTCAATTTCAATTGTTAAATGGAAAAGGAAAGCAAGACTAGAGGGAATGACGAAGAAGCTACAAGCAAAGGATGTTGAGCAGAAAGAAAGGGAAGAGGCAGGCAAAA
AACATGTTCTGGAGCTAACGGTGTCAATGAGATATCGGCGGAGACTGCGGAGCAGTCTCTCCGGACGCAATAAAAACTCTATGCTGGAATGCTTGGGGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGGCTCTCTTCGCCCAGATGATGGAGAACCTGGAACTAGGAGACCAAGAAGCTCAAGAAGTTTTTGAGCTTGAAGAAGAGGAGATCTCTGCGTATGAAGGAGA
GCTAAACAATGTTGTTGCTATGGCGGGAGACAAGCGTGTTTCTAAAATGGAATTTGGTTATGGGGATTTCTGGATTAGACTTCACGATGTTCCTCCAGCGGGCCACACAG
ATAAGAGTGCAAGAAGATTGGGAACTGAAAAATGGGTTCGGTTGTCTTATGAAAAGCTCTTGATTTTTTGTCGGGGGTGCGGAAGAATCGGCCATGGTGAAAACCAAGGA
GATTGTGATGTTCCGCTGCTTTTTGGTATAAGAGGGAGGGGCAGGGGAAGAGGCAGAGGAGAGGGGATTCGTGGAGGTGGTGTTCGAGCAGAGGAGGAGGAATTTTCGAT
GGAGAAAAGGAGGGAGGAGGAGAGGCAGAGGGGAAAACCGTCGTCGAATATTCTAGCCGTTTCCGACTTGGCGGGGGATGAGACAAATAGTCAATTGATGAGCAGAGAAA
TTAAAATAGGGAAGGGACATGTGGCAGAAATTAATTGCGACAGGCTGGCTGGGAAGGGGAAAAAGAAATTGCTTGACCAGGGGACGAACGATTTACTCTTTGGGCCTTTT
GAAGTTTGTTTCGGTCATAAAAGTGAGTCAGCTGATTATTTGATTGGGCCTAAAGTTGGGCCGATAAATGGGATTTTTATTAAAGAAGATATAGGTCAACAATTTTCTAT
GCTGGTTTCTGATGATCCAAAGCCAATTGGATATAGGGGCAGACATGGGCCCGATGAAAAGGAAAAAAGGGTTAACAGTTTTTCGGCAGGGCAGGAAGTTGATGTTGTTA
GGCAGATTGTTGCTGAAAATAATGATAAATCGACATGGAGTCATATGGCCGAGAAAAGAGACGTTGTCAAGGTGCCAGAAGAGAGGGAGAGATGTAGAAATCCTAGTAGA
AATGTTTCATCCAAGAATCTTATAGATGATGTATCTAAGATGGATATTGAGATCGAAAAAACAAGGGAATTGGACAAAGAAGTCGGTAGCAGTGGTGGTGGAAAAATTAA
AAGCTCAATTTCAATTGTTAAATGGAAAAGGAAAGCAAGACTAGAGGGAATGACGAAGAAGCTACAAGCAAAGGATGTTGAGCAGAAAGAAAGGGAAGAGGCAGGCAAAA
AACATGTTCTGGAGCTAACGGTGTCAATGAGATATCGGCGGAGACTGCGGAGCAGTCTCTCCGGACGCAATAAAAACTCTATGCTGGAATGCTTGGGGGCTTAA
Protein sequenceShow/hide protein sequence
MDQALFAQMMENLELGDQEAQEVFELEEEEISAYEGELNNVVAMAGDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSARRLGTEKWVRLSYEKLLIFCRGCGRIGHGENQG
DCDVPLLFGIRGRGRGRGRGEGIRGGGVRAEEEEFSMEKRREEERQRGKPSSNILAVSDLAGDETNSQLMSREIKIGKGHVAEINCDRLAGKGKKKLLDQGTNDLLFGPF
EVCFGHKSESADYLIGPKVGPINGIFIKEDIGQQFSMLVSDDPKPIGYRGRHGPDEKEKRVNSFSAGQEVDVVRQIVAENNDKSTWSHMAEKRDVVKVPEERERCRNPSR
NVSSKNLIDDVSKMDIEIEKTRELDKEVGSSGGGKIKSSISIVKWKRKARLEGMTKKLQAKDVEQKEREEAGKKHVLELTVSMRYRRRLRSSLSGRNKNSMLECLGA