; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013653 (gene) of Chayote v1 genome

Gene IDSed0013653
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG06:8549335..8551485
RNA-Seq ExpressionSed0013653
SyntenySed0013653
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33754.1 retrotransposon protein [Cucumis melo subsp. melo]2.1e-5229.38Show/hide
Query:  MIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPS
        MI +SDL CR++TRM+R  F  LC +LR   GL  T+ +DVEEMVAMFLH++AHDVKNRV+++ F RSGETVSRHF  VL AV+R ++ L K+P P+  +
Subjt:  MIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPS

Query:  CTDSRWN----------------NMAATVR----------------------------------------------------------------------
        C D RW                 N+ A  R                                                                      
Subjt:  CTDSRWN----------------NMAATVR----------------------------------------------------------------------

Query:  -----------------------------NIRHS----------------WTAMEDS---------------TLVQSLI---------------------
                                     N++HS                WT +                  TL+ +LI                     
Subjt:  -----------------------------NIRHS----------------WTAMEDS---------------TLVQSLI---------------------

Query:  ------------------------------------------ELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAE
                                                  ELV  GGW+SDNGTFR  Y  +L+R+M  KL GC + +TTVID R+K+LKR +QAIAE
Subjt:  ------------------------------------------ELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAE

Query:  MLGNTCSGFGWNDKYKCIEVEPTVFDNWVQ-----------PFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEILV
        MLG  CSGFGWND+ KCI  E  +FDNWV+           PFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +
Subjt:  MLGNTCSGFGWNDKYKCIEVEPTVFDNWVQ-----------PFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEILV

Query:  AEEEDPNTPTSRVARPSSSSVGEKRKRVSEK
         +++   +  SR +   + S G KRKR S++
Subjt:  AEEEDPNTPTSRVARPSSSSVGEKRKRVSEK

KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]6.2e-6043.81Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKNRV RR F RSGETVSRHF  VL  V+R H+IL K+P+ +  SC+    RW  MA+    + +H WT 
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA

Query:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--
        +ED  LV+ L++LV++G WR DNGTF+  Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV  
Subjt:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--

Query:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR
                 +PFP++ DL  +FG+DRA G          SQ+ARD  E+D    +      +++ IP     E    E+ P+TPTS      + S    +
Subjt:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR

Query:  KRVSEKQEMLDVLRA
        KR S  ++++D  RA
Subjt:  KRVSEKQEMLDVLRA

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-6131.62Show/hide
Query:  RHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDI
        RH  RQ+ +F MI  SDL CR++TRM+R CF  LC +LRT  GL  T+ +DVEEMVAMFLHI+AHDVKNRV++R F RSGET+SRHF  VL AVIR HD 
Subjt:  RHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDI

Query:  LYKKPEPIQPSCTDSRW-----------------------------------------------------------------------------------
        L KKP+P+   CTD RW                                                                                   
Subjt:  LYKKPEPIQPSCTDSRW-----------------------------------------------------------------------------------

Query:  ----------------------------------------NNMAATVRNI--------------------------------------------------
                                                N   ++ RN+                                                  
Subjt:  ----------------------------------------NNMAATVRNI--------------------------------------------------

Query:  -------------RHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWN
                     +H+WT  E++     L+ELV  GGWRSDNGTFR  Y N+L R+M  K+PGC I ++T ID+R+K +KR + A+AEM G  CSGFGWN
Subjt:  -------------RHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWN

Query:  DKYKCIEVEPTVFDNWVQP---------FPHYDDLAYIFGKDRACGSISQSARDIAEEDS------NAEVGEGGGSQEYYIPEILVAEEEDPNTPTSRVA
        D+ KCI  E  VFD+W  P         F HYD+L+Y+FGKDRA G  ++S  DI   +        A+          Y   + ++ ++   T T+RV+
Subjt:  DKYKCIEVEPTVFDNWVQP---------FPHYDDLAYIFGKDRACGSISQSARDIAEEDS------NAEVGEGGGSQEYYIPEILVAEEEDPNTPTSRVA

Query:  RPSSSSVGEKRKRVSEKQEMLDVLR
           + S G KRKR     +  D++R
Subjt:  RPSSSSVGEKRKRVSEKQEMLDVLR

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]1.9e-5638.96Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCT------------
        M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKNRV RR   RSGETVSRHF +VL AV+R H+IL K+P+P+  SC             
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCT------------

Query:  -------------------------------DSRWNNMAAT-VRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPIT
                                        S    MA+T  +  +H WT +ED  LV+ L++LV+EGGWR+DNGTF+  Y                  
Subjt:  -------------------------------DSRWNNMAAT-VRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPIT

Query:  STTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV-----------QPFPHYDDLAYIFGKDRACGS--------ISQSARDIAE
                     +QY AIAEM+G  CSGFGWN+  KCIEVE  VFD+WV           +PFP++ DL  +FG+DRA G          SQ+ARD  E
Subjt:  STTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV-----------QPFPHYDDLAYIFGKDRACGS--------ISQSARDIAE

Query:  EDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRA
        +D +  +      +++ IP     E    E+ P+TPTS      SS   +KR+  S   +++D  RA
Subjt:  EDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRA

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.6e-6044.13Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKNRV RR F RSGETVSRHF  VL  V+R H+IL K+P+ +  SC+    RW  MA+    + +H WT 
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA

Query:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--
        +ED  LV+ L++LV++G WR DNGTF+  Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV  
Subjt:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--

Query:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR
                 +PFP++ DL  +FG+DRA G          SQ+ARD  E+D    +      +++ IP     E    E+ P+TPTS      SS   +KR
Subjt:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR

Query:  KRVSEKQEMLDVLRA
        +  S  ++++D  RA
Subjt:  KRVSEKQEMLDVLRA

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein3.0e-6043.81Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKNRV RR F RSGETVSRHF  VL  V+R H+IL K+P+ +  SC+    RW  MA+    + +H WT 
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA

Query:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--
        +ED  LV+ L++LV++G WR DNGTF+  Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV  
Subjt:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--

Query:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR
                 +PFP++ DL  +FG+DRA G          SQ+ARD  E+D    +      +++ IP     E    E+ P+TPTS      + S    +
Subjt:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR

Query:  KRVSEKQEMLDVLRA
        KR S  ++++D  RA
Subjt:  KRVSEKQEMLDVLRA

A0A5A7SWD8 Retrotransposon protein4.6e-6131.62Show/hide
Query:  RHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDI
        RH  RQ+ +F MI  SDL CR++TRM+R CF  LC +LRT  GL  T+ +DVEEMVAMFLHI+AHDVKNRV++R F RSGET+SRHF  VL AVIR HD 
Subjt:  RHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDI

Query:  LYKKPEPIQPSCTDSRW-----------------------------------------------------------------------------------
        L KKP+P+   CTD RW                                                                                   
Subjt:  LYKKPEPIQPSCTDSRW-----------------------------------------------------------------------------------

Query:  ----------------------------------------NNMAATVRNI--------------------------------------------------
                                                N   ++ RN+                                                  
Subjt:  ----------------------------------------NNMAATVRNI--------------------------------------------------

Query:  -------------RHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWN
                     +H+WT  E++     L+ELV  GGWRSDNGTFR  Y N+L R+M  K+PGC I ++T ID+R+K +KR + A+AEM G  CSGFGWN
Subjt:  -------------RHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWN

Query:  DKYKCIEVEPTVFDNWVQP---------FPHYDDLAYIFGKDRACGSISQSARDIAEEDS------NAEVGEGGGSQEYYIPEILVAEEEDPNTPTSRVA
        D+ KCI  E  VFD+W  P         F HYD+L+Y+FGKDRA G  ++S  DI   +        A+          Y   + ++ ++   T T+RV+
Subjt:  DKYKCIEVEPTVFDNWVQP---------FPHYDDLAYIFGKDRACGSISQSARDIAEEDS------NAEVGEGGGSQEYYIPEILVAEEEDPNTPTSRVA

Query:  RPSSSSVGEKRKRVSEKQEMLDVLR
           + S G KRKR     +  D++R
Subjt:  RPSSSSVGEKRKRVSEKQEMLDVLR

A0A5D3C7T4 Uncharacterized protein9.1e-5738.96Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCT------------
        M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKNRV RR   RSGETVSRHF +VL AV+R H+IL K+P+P+  SC             
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCT------------

Query:  -------------------------------DSRWNNMAAT-VRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPIT
                                        S    MA+T  +  +H WT +ED  LV+ L++LV+EGGWR+DNGTF+  Y                  
Subjt:  -------------------------------DSRWNNMAAT-VRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPIT

Query:  STTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV-----------QPFPHYDDLAYIFGKDRACGS--------ISQSARDIAE
                     +QY AIAEM+G  CSGFGWN+  KCIEVE  VFD+WV           +PFP++ DL  +FG+DRA G          SQ+ARD  E
Subjt:  STTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV-----------QPFPHYDDLAYIFGKDRACGS--------ISQSARDIAE

Query:  EDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRA
        +D +  +      +++ IP     E    E+ P+TPTS      SS   +KR+  S   +++D  RA
Subjt:  EDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRA

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein7.9e-6144.13Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKNRV RR F RSGETVSRHF  VL  V+R H+IL K+P+ +  SC+    RW  MA+    + +H WT 
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDS--RWNNMAATVRNI-RHSWTA

Query:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--
        +ED  LV+ L++LV++G WR DNGTF+  Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV  
Subjt:  MEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV--

Query:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR
                 +PFP++ DL  +FG+DRA G          SQ+ARD  E+D    +      +++ IP     E    E+ P+TPTS      SS   +KR
Subjt:  ---------QPFPHYDDLAYIFGKDRACGSI--------SQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAE----EEDPNTPTSRVARPSSSSVGEKR

Query:  KRVSEKQEMLDVLRA
        +  S  ++++D  RA
Subjt:  KRVSEKQEMLDVLRA

E5GBB2 Retrotransposon protein1.0e-5229.38Show/hide
Query:  MIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPS
        MI +SDL CR++TRM+R  F  LC +LR   GL  T+ +DVEEMVAMFLH++AHDVKNRV+++ F RSGETVSRHF  VL AV+R ++ L K+P P+  +
Subjt:  MIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPS

Query:  CTDSRWN----------------NMAATVR----------------------------------------------------------------------
        C D RW                 N+ A  R                                                                      
Subjt:  CTDSRWN----------------NMAATVR----------------------------------------------------------------------

Query:  -----------------------------NIRHS----------------WTAMEDS---------------TLVQSLI---------------------
                                     N++HS                WT +                  TL+ +LI                     
Subjt:  -----------------------------NIRHS----------------WTAMEDS---------------TLVQSLI---------------------

Query:  ------------------------------------------ELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAE
                                                  ELV  GGW+SDNGTFR  Y  +L+R+M  KL GC + +TTVID R+K+LKR +QAIAE
Subjt:  ------------------------------------------ELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAE

Query:  MLGNTCSGFGWNDKYKCIEVEPTVFDNWVQ-----------PFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEILV
        MLG  CSGFGWND+ KCI  E  +FDNWV+           PFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +
Subjt:  MLGNTCSGFGWNDKYKCIEVEPTVFDNWVQ-----------PFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEILV

Query:  AEEEDPNTPTSRVARPSSSSVGEKRKRVSEK
         +++   +  SR +   + S G KRKR S++
Subjt:  AEEEDPNTPTSRVARPSSSSVGEKRKRVSEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.8e-1242.45Show/hide
Query:  IRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTA--VIRCHDI-------LYK
        ++Q   AC +  RM+  CF TLC+ML+T+  L+ T  I +EE VAMFL I  H+   R V   F R+ ETV R F+ VLTA  ++ C  I       LY+
Subjt:  IRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTA--VIRCHDI-------LYK

Query:  KPEPIQ
         PE +Q
Subjt:  KPEPIQ

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.8e-1533.33Show/hide
Query:  CRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDSRWNN
        C E  RM++  F  LCD+L+T G LR T+ I +E  +A+FL I+ H+++ R V+ +F  SGET+SRHF +VL AVI      +      QP+       N
Subjt:  CRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIRCHDILYKKPEPIQPSCTDSRWNN

Query:  MAATVRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNG
             ++       + DS  +  ++ + ++G +R+ NG
Subjt:  MAATVRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTACAACCCTAGGACAAAAAATTATTGCTCTTTCTTTAGACACCATTTTCGCCAAATGACTTTCTTCTCGATGATAAGACAAAGCGATCTAGCTTGTCGTGAGAC
AACTAGAATGAATCGTAGCTGCTTTGAAACCTTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTC
TACATATCATGGCTCATGATGTTAAGAACCGCGTCGTTCGAAGAATATTTACAAGATCCGGCGAGACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTGATTCGT
TGTCATGACATTTTGTACAAGAAACCTGAACCTATCCAACCATCATGCACTGATAGTAGATGGAACAACATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGC
AATGGAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGAC
TAATGCACCTAAAGCTACCTGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTTTGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAAT
ACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAACTGGGTTCAGCCTTTTCCACATTACGATGACTTGGCTTATAT
TTTTGGAAAGGATAGAGCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCCCAAGAATATTACA
TACCTGAGATTCTTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAG
CAGGAAATGCTTGATGTGTTGCGTGCTTGGCATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTACAACCCTAGGACAAAAAATTATTGCTCTTTCTTTAGACACCATTTTCGCCAAATGACTTTCTTCTCGATGATAAGACAAAGCGATCTAGCTTGTCGTGAGAC
AACTAGAATGAATCGTAGCTGCTTTGAAACCTTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTC
TACATATCATGGCTCATGATGTTAAGAACCGCGTCGTTCGAAGAATATTTACAAGATCCGGCGAGACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTGATTCGT
TGTCATGACATTTTGTACAAGAAACCTGAACCTATCCAACCATCATGCACTGATAGTAGATGGAACAACATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGC
AATGGAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGAC
TAATGCACCTAAAGCTACCTGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTTTGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAAT
ACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAACTGGGTTCAGCCTTTTCCACATTACGATGACTTGGCTTATAT
TTTTGGAAAGGATAGAGCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCCCAAGAATATTACA
TACCTGAGATTCTTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAG
CAGGAAATGCTTGATGTGTTGCGTGCTTGGCATGCATGA
Protein sequenceShow/hide protein sequence
MNYNPRTKNYCSFFRHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNRVVRRIFTRSGETVSRHFQSVLTAVIR
CHDILYKKPEPIQPSCTDSRWNNMAATVRNIRHSWTAMEDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGN
TCSGFGWNDKYKCIEVEPTVFDNWVQPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGGSQEYYIPEILVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEK
QEMLDVLRAWHA