CuGenDBv2

Gene ID	Sed0013704
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S29
Genome location	LG10:36332023..36337400
RNA-Seq Expression	Sed0013704
Synteny	Sed0013704
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001209 - Ribosomal protein S14 IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z IPR043140 - Ribosomal protein S14/S29

Homology

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GenBank top hits

e value

%identity

Alignment

XP_002271801.1 PREDICTED: 40S ribosomal protein S29 [Vitis vinifera]

3.3e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_011078121.1 40S ribosomal protein S29 [Sesamum indicum]

4.3e-27

96.43

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSN+WNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_015866899.1 40S ribosomal protein S29 [Ziziphus jujuba]

1.9e-27

100

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_024440496.1 40S ribosomal protein S29 isoform X2 [Populus trichocarpa]

2.5e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSN+WNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_034927840.1 40S ribosomal protein S29-like [Populus alba]

4.3e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGH+NVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3V2W1 40S ribosomal protein S29

1.6e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A2G9HKH9 40S ribosomal protein S29

1.6e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A2K1Z561 Uncharacterized protein

9.4e-28

100

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A6P3YTF8 40S ribosomal protein S29

9.4e-28

100

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

A9P9S8 Uncharacterized protein

1.2e-27

98.21

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSN+WNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

SwissProt top hits

e value

%identity

Alignment

Q4PM47 40S ribosomal protein S29

6.5e-18

68.52

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR CRVC N HG+IRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S29

1.0e-26

89.29

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKNYG GSR CRVCGN HG+IRKYGLMCCRQCFRS+AK+IGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Q680P8 40S ribosomal protein S29

5.9e-27

91.07

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HG+IRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Q757G1 40S ribosomal protein S29

1.1e-17

67.86

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        M H NVW SHP+NYG GSR CRVC +  G+IRKYGL  CRQCFR  A +IGF KYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Q7XYB0 40S ribosomal protein S29

4.1e-20

67.86

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGH N+W SHP+ YG GSR+C++CGN HG+IRKY +  CRQCFR  AK+IGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Arabidopsis top hits

e value

%identity

Alignment

AT3G43980.1 Ribosomal protein S14p/S29e family protein

4.2e-28

91.07

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HG+IRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

AT3G44010.1 Ribosomal protein S14p/S29e family protein

4.2e-28

91.07

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HG+IRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

AT4G33865.1 Ribosomal protein S14p/S29e family protein

4.2e-28

91.07

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Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HG+IRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Sequences

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CDS sequence

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ATGGGGCACTCAAACGTGTGGAACTCGCACCCCAAGAACTATGGCCCCGGCTCTCGCACCTGCCGGGTTTGCGGAAACCCTCACGGAATTATCAGAAAGTACGGGCTTAT
GTGCTGCAGACAATGCTTCCGCAGCAATGCCAAGGAAATTGGATTCATCAAGTACCGCTAA

mRNA sequence

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GGAATATATATTATTTTCCGTACATATCTGCTAGGGTTTTGTCTCTCCCTCCCTTATAAATACATACTTTTCCTGTTTCTCTGGTTCATCACAAAGCATTTGCCGCTTCC
AAGGAGCTCATCAGAATTCAATCTCTCAGGCAATTCCAAGCATGGGGCACTCAAACGTGTGGAACTCGCACCCCAAGAACTATGGCCCCGGCTCTCGCACCTGCCGGGTT
TGCGGAAACCCTCACGGAATTATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAATGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAA
ATTTTGTCACTCCCCATTAAAGATCAATTGAAGGAATATGGTTACCAACCTTTTCATATATATATTAGAAAGAACTTTTTATTTTGATTTTCTGTCTCTAGTTCAATTTT
TTTGGAATCTTGAGTTTGATTGTTGAACTTAGTCCACTACACTGTTTACGAATGTTGAAGATCTAAGTTTGTGTTTTTGATTCTGCAACGTATTCTTCTCTGCCCATTTT
TCTTCCTACTTTTTCAAATGTGATCAAGATTGTCTTTGTTTGTAGTATGAAAAGTATAGTGTTCCAAGTTCTAGGTTCCTAGTCTCAATGGACTTCTAGATATTAAGAGT
TTGAAATCTAAAATGTAATACGATCAAGCGATAGTCCACGCACGTTCAAGCCACATGCATTACTACGCGTAGACTTAAACTAATGTCGAGCTTTGGCTCCGTACTTATAG
TTCAATCGACTGCTAAC

Protein sequence

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MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR

Sed0013704 (gene) of Chayote v1 genome