CuGenDBv2

Gene ID	Sed0013748
Organism	Sechium edule (Chayote v1)
Description	Ribonuclease T(2)
Genome location	LG04:38954882..38955584
RNA-Seq Expression	Sed0013748
Synteny	Sed0013748
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0003723 - RNA binding (molecular function) GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domains	IPR001568 - Ribonuclease T2-like IPR036430 - Ribonuclease T2-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581688.1 hypothetical protein SDJN03_21690, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-18

34.78

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C   P   ++FT+HGLW ++ S   +VC G   P   + Q+A++  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G          +G++   +Q   G    P LRC         QL+EI L F+K+G TL+DCT
Subjt:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT

XP_022932791.1 ribonuclease MC-like [Cucurbita moschata]

2.9e-20

35.87

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C   P  P++FT+HGLW ++ S   +VC G   P  P  Q+A++  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G          +G++   +Q   G    P LRC         QL+EI L F+K+G TL+DCT
Subjt:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT

XP_022934593.1 ribonuclease MC-like [Cucurbita moschata]

8.3e-20

35.87

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A+CS   V C ++P  P++FT+HGLW ++ S A +VC     P  P  Q+A++  QL+TYWP+VI G NQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSGFGSVPNKLQP--------KLGIATIPHLRC----QSKLHGPQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G G     ++         +      P LRC    QSK    QL EI L F+KDG TL+DCT
Subjt:  ---------KIMYSLTVILNSSGFGSVPNKLQP--------KLGIATIPHLRC----QSKLHGPQLYEIGLSFEKDGATLMDCT

XP_023514499.1 ribonuclease MC-like [Cucurbita pepo subsp. pepo]

2.1e-18

34.24

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C   P  P++FT+HGLW ++ S   ++C G   P  P     ++  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G          +G++   +Q   G    P LRC         QL+EI L F+K+G TL+DCT
Subjt:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT

XP_038906187.1 ribonuclease MC-like [Benincasa hispida]

9.5e-24

38.59

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C+ +P  PS+FT+HGLW ++ S A +VC G+  P  P  Q+A+I  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSGFG----------SVPNKLQPKLGIATIPHLRCQSKLH--GPQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G G          ++ N +Q   G   IP LRC +       QL+EI L F+K+G TL+DCT
Subjt:  ---------KIMYSLTVILNSSGFG----------SVPNKLQPKLGIATIPHLRCQSKLH--GPQLYEIGLSFEKDGATLMDCT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DYQ5 Ribonuclease T(2)

6.4e-18

34.62

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Query:  MLVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLW--LNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------KIMYS----
        ++VQQ+   +C+G NV C   PP+P+ FT+HGLW  +N+     + CPG   P  P    AS  QQLDTYWP+V    NQ FW+       K  Y     
Subjt:  MLVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLW--LNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------KIMYS----

Query:  ------------------LTVILNSSGFGSVPNKLQPKLGIAT--IPHLRCQSKLH--GPQLYEIGLSFEKDGATLMDCTHH
                          L +I N +G     N ++  +  AT   P LRC    H    QL+EI L F+++G TL+DC  +
Subjt:  ------------------LTVILNSSGFGSVPNKLQPKLGIAT--IPHLRCQSKLH--GPQLYEIGLSFEKDGATLMDCTHH

A0A6J1EXD5 Ribonuclease T(2)

1.4e-20

35.87

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C   P  P++FT+HGLW ++ S   +VC G   P  P  Q+A++  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G          +G++   +Q   G    P LRC         QL+EI L F+K+G TL+DCT
Subjt:  ---------KIMYSLTVILNSSG----------FGSVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT

A0A6J1F837 Ribonuclease T(2)

4.0e-20

35.87

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A+CS   V C ++P  P++FT+HGLW ++ S A +VC     P  P  Q+A++  QL+TYWP+VI G NQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSGFGSVPNKLQP--------KLGIATIPHLRC----QSKLHGPQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G G     ++         +      P LRC    QSK    QL EI L F+KDG TL+DCT
Subjt:  ---------KIMYSLTVILNSSGFGSVPNKLQP--------KLGIATIPHLRC----QSKLHGPQLYEIGLSFEKDGATLMDCT

A0A6J1G4E7 Ribonuclease T(2)

2.5e-14

30.56

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+    CSG  V CK++PP  + FT+HGLW ++ S A ++C G    L+       ++ +L  +WPN+  GN+  FWR                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  -------KIMYSLTVILNSSGFGSVPNKLQ-------PKLGIATIPHLRC--QSKLHGPQLYEIGLSFEKDGATLMDCTH
                + Y L  +LN++G        Q        K  I  +P LRC   S+ +  QLYEI + FE++   L+DCT+
Subjt:  -------KIMYSLTVILNSSGFGSVPNKLQ-------PKLGIATIPHLRC--QSKLHGPQLYEIGLSFEKDGATLMDCTH

A0A6J1IAR7 Ribonuclease T(2)

3.8e-18

34.78

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------
        +VQQ+P A CSG  V C   P  P++FT+HGLW +  S    VC G   P   + Q+A++  QL+TYWP+VI GNNQ+FW+                   
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWR-------------------

Query:  ---------KIMYSLTVILNSSGFG----------SVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT
                    Y L  ILN++G G          ++   +Q   G    P LRC         QL+EI L F+K+G TL++CT
Subjt:  ---------KIMYSLTVILNSSGFG----------SVPNKLQPKLGIATIPHLRCQSKLHG--PQLYEIGLSFEKDGATLMDCT

SwissProt top hits

e value

%identity

Alignment

O80323 Ribonuclease S-3

2.9e-07

26.6

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Query:  QQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGAS-VVCPGVQTPLKPKFQLASITQQLDTYWPNVIG-GNNQKFWRKIMYSLTVILNSSGFGSVP
        QQY  A C+ +   CK   P   +FTVHGLW +++ G     CP      + K     +  QL+  WPNV     N  FW K          S G+ ++ 
Subjt:  QQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGAS-VVCPGVQTPLKPKFQLASITQQLDTYWPNVIG-GNNQKFWRKIMYSLTVILNSSGFGSVP

Query:  N--------------------------KLQP---KLGIATI------------PHLRCQSKLHGPQLYEIGLSFEKDGATLMDCTHHY
        N                          K++P   K  +  I            P L+CQ K    +L EI L  +K G   +DC H +
Subjt:  N--------------------------KLQP---KLGIATI------------PHLRCQSKLHGPQLYEIGLSFEKDGATLMDCTHHY

P23540 Ribonuclease MC

1.2e-08

28.02

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Query:  VQQYPEARC----SGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFW----------------R
        VQQ+P A C    SG      LR      FT+HGLW      +   CP  Q       +++ +  QL+T WPNV+  NNQ+FW                +
Subjt:  VQQYPEARC----SGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFW----------------R

Query:  KIMYSLTVIL--NSSGFGSV-PNKLQP--------------KLGIATIPHLRCQS--KLHGPQLYEIGLSFEKDGATLMDCT
           + L V +  N    G++ P+   P              K      P LRC++  +     L ++   F +DG+TL+DCT
Subjt:  KIMYSLTVIL--NSSGFGSV-PNKLQP--------------KLGIATIPHLRCQS--KLHGPQLYEIGLSFEKDGATLMDCT

Q38716 Ribonuclease S-2

1.8e-04

32.14

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGN----NQKFW
        LV Q+P + CS    +C  R  +PS FT+HGLW ++ S     C      +  K     + Q L  +WP++         QKFW
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGN----NQKFW

Q38717 Ribonuclease S-4

7.9e-05

30.59

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Query:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNV----IGGNNQKFWR
        LV Q+P++ C  ++  C+ R P+PS FT+HGLW ++ +  +       T    +F    I Q+++  WP++    I G +  FW+
Subjt:  LVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNV----IGGNNQKFWR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGGTTCAACAGTATCCCGAGGCCAGATGTAGTGGTGACAATGTGAATTGCAAACTTCGACCTCCAATTCCGAGTATTTTCACGGTCCACGGTCTGTGGCTGAATGA
TGTGTCCGGTGCTTCAGTTGTTTGTCCTGGTGTACAGACACCTCTCAAGCCGAAATTTCAGCTTGCTTCAATAACGCAGCAATTGGACACATATTGGCCAAATGTGATAG
GTGGGAACAACCAAAAGTTCTGGAGGAAGATCATGTACAGCTTAACGGTCATCTTGAACTCTTCTGGGTTTGGCTCGGTTCCAAACAAACTCCAACCGAAACTAGGCATC
GCAACCATTCCACACCTTCGCTGCCAGTCTAAATTACATGGACCTCAACTATATGAAATTGGCTTGTCCTTTGAAAAAGACGGCGCCACTCTTATGGACTGTACTCATCA
TTATGTTCTTCTACTGCTATTACCAAGTTAA

mRNA sequence

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Protein sequence

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MLVQQYPEARCSGDNVNCKLRPPIPSIFTVHGLWLNDVSGASVVCPGVQTPLKPKFQLASITQQLDTYWPNVIGGNNQKFWRKIMYSLTVILNSSGFGSVPNKLQPKLGI
ATIPHLRCQSKLHGPQLYEIGLSFEKDGATLMDCTHHYVLLLLLPS

Sed0013748 (gene) of Chayote v1 genome