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Sed0013805 (gene) of Chayote v1 genome

Gene IDSed0013805
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23
Genome locationLG12:8835573..8835755
RNA-Seq ExpressionSed0013805
SyntenySed0013805
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]1.4e-0774.14Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VLV A+AVSA MA+SEGPAPAP  SS  T AALPAVGA IGAS+ SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
KRH33040.1 hypothetical protein GLYMA_10G094600v4 [Glycine max]1.2e-0665.52Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG +AAA  AVG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
KYP55928.1 hypothetical protein KK1_002155 [Cajanus cajan]2.0e-0665.52Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A++VSAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
KYP55935.1 hypothetical protein KK1_002162 [Cajanus cajan]2.6e-0663.79Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]1.3e-0874.14Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VLV A+ +SA MAS EGPAPAPG SS   AAALPAVGA IGAS+ASFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
TrEMBL top hitse value%identityAlignment
A0A151SMB5 Uncharacterized protein9.8e-0765.52Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A++VSAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
A0A151SMD0 Uncharacterized protein1.3e-0663.79Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
A0A5D3DQ83 Arabinogalactan peptide 236.8e-0874.14Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VLV A+AVSA MA+SEGPAPAP  SS  T AALPAVGA IGAS+ SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
I1L9W6 Uncharacterized protein5.7e-0765.52Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG +AAA  AVG+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
K7KXD9 Uncharacterized protein1.7e-0662.07Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M+MKKV C VL+ A++VSA +A++E PAPAPGPSSG  +A+LP +G+++GASV SFFA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.0e-0551.72Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M MKK+ C VL  A++++A MA+ E  APAPGP+S   +AALPA+G+++GAS+ S F+
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.8e-0546.55Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M MKK+ C V+  A++++A MA+  G APAPGP++   + A+PA+G+++GAS+ S FA
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
AT3G57690.1 arabinogalactan protein 232.2e-0651.72Show/hide
Query:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA
        M MKK+ C VL  A++++A MA+ E  APAPGP+S   +AALPA+G+++GAS+ S F+
Subjt:  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGAAGAAGGTTATCTGCACCGTTCTCGTTGTCGCTTCTGCCGTTAGTGCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCTGCCCCGGGCCCGTCCTCAGGCAC
AACTGCTGCTGCTCTTCCGGCTGTTGGCGCTATCATTGGTGCTTCTGTTGCATCCTTCTTTGCTTGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACATGAAGAAGGTTATCTGCACCGTTCTCGTTGTCGCTTCTGCCGTTAGTGCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCTGCCCCGGGCCCGTCCTCAGGCAC
AACTGCTGCTGCTCTTCCGGCTGTTGGCGCTATCATTGGTGCTTCTGTTGCATCCTTCTTTGCTTGCTTGTAA
Protein sequenceShow/hide protein sequence
MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFACL