; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013842 (gene) of Chayote v1 genome

Gene IDSed0013842
OrganismSechium edule (Chayote v1)
Descriptionmicrotubule-associated protein RP/EB family member 1-like
Genome locationLG12:397569..398174
RNA-Seq ExpressionSed0013842
SyntenySed0013842
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597057.1 hypothetical protein SDJN03_10237, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1043.28Show/hide
Query:  MTNFPRFYRPWPL-RPTPVVVSPVASPPTVAITAVAPPSRPPAKATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGN--EEL
        M++ P   R + L RPTP   S    PP VA  A  P      K  KS H HQ S+ +N+ GE+ G VM IN S EG+EI+  K  ++KK + GN  +  
Subjt:  MTNFPRFYRPWPL-RPTPVVVSPVASPPTVAITAVAPPSRPPAKATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGN--EEL

Query:  KKSNLLVMNANFQGVNHSILYNTSSSHSHAGLLF
        KK  ++ MN NFQGVN+S+L+N+S +   AGL F
Subjt:  KKSNLLVMNANFQGVNHSILYNTSSSHSHAGLLF

XP_004133796.1 extensin [Cucumis sativus]4.8e-0848.31Show/hide
Query:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL
        K +H+   S  +N+ GEN GAVMHI  SS+G E++KKK    + K    E+  KSN        MN+NFQGVN+SILYN+S SH   GL
Subjt:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL

XP_008437849.1 PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo]1.8e-0748.31Show/hide
Query:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL
        K  H+   S  +N+ G+N GAVMHI  SS+G EI+KKK +  + K    E+  KSN        MN+NFQGVN+SILYN+S SH   GL
Subjt:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL

XP_022147442.1 proline-rich receptor-like protein kinase PERK2 [Momordica charantia]2.2e-0536.22Show/hide
Query:  PTPVVVS---PVASPPTVAITAVAPPSRPPAKAT-------KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEE--KKKTRGNEELKKSNL
        P P + S   P     ++    V  P++P  + +       + K + Q S  + + GEN GA+MHI  SS+G E+VKKK + E      +GN+       
Subjt:  PTPVVVS---PVASPPTVAITAVAPPSRPPAKAT-------KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEE--KKKTRGNEELKKSNL

Query:  LVMNANFQGVNHSILYNTSSSHSHAGL
          MN+NFQGVN+S+LYN+S SH   GL
Subjt:  LVMNANFQGVNHSILYNTSSSHSHAGL

XP_023521993.1 uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo]2.9e-0542.86Show/hide
Query:  KATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKG----AEEKKKTRGNEELKKSNLLVMNANFQGVNHSILYNTSSSHSHAGL
        K  + +   Q S  +N+ GEN GAVMHI  SS+  E  KKK     + E +K              MN+NFQGVN+SILYN+S SH   GL
Subjt:  KATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKG----AEEKKKTRGNEELKKSNLLVMNANFQGVNHSILYNTSSSHSHAGL

TrEMBL top hitse value%identityAlignment
A0A0A0L5T3 Uncharacterized protein2.3e-0848.31Show/hide
Query:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL
        K +H+   S  +N+ GEN GAVMHI  SS+G E++KKK    + K    E+  KSN        MN+NFQGVN+SILYN+S SH   GL
Subjt:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL

A0A1S3AVJ6 microtubule-associated protein RP/EB family member 1-like8.9e-0848.31Show/hide
Query:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL
        K  H+   S  +N+ G+N GAVMHI  SS+G EI+KKK +  + K    E+  KSN        MN+NFQGVN+SILYN+S SH   GL
Subjt:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL

A0A5A7TZ60 Microtubule-associated protein RP/EB family member 1-like8.9e-0848.31Show/hide
Query:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL
        K  H+   S  +N+ G+N GAVMHI  SS+G EI+KKK +  + K    E+  KSN        MN+NFQGVN+SILYN+S SH   GL
Subjt:  KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSN-----LLVMNANFQGVNHSILYNTSSSHSHAGL

A0A6J1D2D2 proline-rich receptor-like protein kinase PERK21.1e-0536.22Show/hide
Query:  PTPVVVS---PVASPPTVAITAVAPPSRPPAKAT-------KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEE--KKKTRGNEELKKSNL
        P P + S   P     ++    V  P++P  + +       + K + Q S  + + GEN GA+MHI  SS+G E+VKKK + E      +GN+       
Subjt:  PTPVVVS---PVASPPTVAITAVAPPSRPPAKAT-------KSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEE--KKKTRGNEELKKSNL

Query:  LVMNANFQGVNHSILYNTSSSHSHAGL
          MN+NFQGVN+S+LYN+S SH   GL
Subjt:  LVMNANFQGVNHSILYNTSSSHSHAGL

A0A6J1IEX0 DNA-directed RNA polymerase II subunit 1-like isoform X21.4e-0542.86Show/hide
Query:  KATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKG----AEEKKKTRGNEELKKSNLLVMNANFQGVNHSILYNTSSSHSHAGL
        K  + +   Q S  +N+ GEN GAVMHI  SS+  E  KKK     + E +K              MN+NFQGVN+SILYN+S SH   GL
Subjt:  KATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKG----AEEKKKTRGNEELKKSNLLVMNANFQGVNHSILYNTSSSHSHAGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATTTTCCTCGCTTCTATCGTCCATGGCCTTTACGACCTACTCCAGTCGTTGTCTCTCCTGTGGCTTCACCCCCCACTGTCGCCATCACGGCGGTCGCACCGCC
ATCTCGGCCTCCGGCGAAGGCGACAAAATCTAAGCATGAGCATCAGCCGAGTCGGGGTTTGAACCTTGATGGTGAAAATAAGGGCGCTGTTATGCATATTAATGTATCAT
CTGAAGGGATAGAAATTGTGAAGAAGAAAGGAGCTGAAGAAAAGAAGAAAACTAGAGGAAATGAAGAATTAAAGAAATCAAATTTGTTAGTGATGAATGCAAATTTTCAA
GGGGTCAATCATTCAATTTTGTACAACACTTCTTCTTCCCACTCTCATGCTGGCCTGCTTTTTTATGATGTATGA
mRNA sequenceShow/hide mRNA sequence
AATACAAATTGGGGGAGGGCTTATCTCCACATTTTAATTATGGAAAACTGTATACCAAAAAAGATTATACATATAATCCTTCCATATTTCCATTTCTATTTCATTAATCT
ATCGGTCTATAAATACCCACAAAAATACAACTCTTACATATAATTTTCCAGTTTCAAAATCTTTAAGCTTTTAATTTCCTCCTTACCAAACATGACAAATTTTCCTCGCT
TCTATCGTCCATGGCCTTTACGACCTACTCCAGTCGTTGTCTCTCCTGTGGCTTCACCCCCCACTGTCGCCATCACGGCGGTCGCACCGCCATCTCGGCCTCCGGCGAAG
GCGACAAAATCTAAGCATGAGCATCAGCCGAGTCGGGGTTTGAACCTTGATGGTGAAAATAAGGGCGCTGTTATGCATATTAATGTATCATCTGAAGGGATAGAAATTGT
GAAGAAGAAAGGAGCTGAAGAAAAGAAGAAAACTAGAGGAAATGAAGAATTAAAGAAATCAAATTTGTTAGTGATGAATGCAAATTTTCAAGGGGTCAATCATTCAATTT
TGTACAACACTTCTTCTTCCCACTCTCATGCTGGCCTGCTTTTTTATGATGTATGA
Protein sequenceShow/hide protein sequence
MTNFPRFYRPWPLRPTPVVVSPVASPPTVAITAVAPPSRPPAKATKSKHEHQPSRGLNLDGENKGAVMHINVSSEGIEIVKKKGAEEKKKTRGNEELKKSNLLVMNANFQ
GVNHSILYNTSSSHSHAGLLFYDV