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Sed0013876 (gene) of Chayote v1 genome

Gene IDSed0013876
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationLG01:853283..853878
RNA-Seq ExpressionSed0013876
SyntenySed0013876
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]5.3e-3363.56Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TL + KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]3.3e-3555.42Show/hide
Query:  MASSSRCNL---FQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYD
        MASSSR +    F S TP+FFKVILP  LT+ KL VP  FV+ HGEALQ EEV LKV +GA+W VG+EK NGKVWF KGW +FV FYSI   YFLTFRY+
Subjt:  MASSSRCNL---FQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYD

Query:  GNFCFFVVIFDKSCLEIKYPM----PIKREIEVFEDREILDSKKRSRK------KHVAHKGKAKFT
         N CF V IFD S  EI+YPM     I+ E E FED+ ++  ++R  K        VAH  K K +
Subjt:  GNFCFFVVIFDKSCLEIKYPM----PIKREIEVFEDREILDSKKRSRK------KHVAHKGKAKFT

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]5.3e-3363.56Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TL + KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]6.9e-3363.56Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TL + KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]1.4e-3364.41Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TLT+ KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

TrEMBL top hitse value%identityAlignment
A0A5A7TS22 B3 domain-containing transcription factor VRN1-like3.1e-2345.52Show/hide
Query:  NLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIF
        NLF SP P+FFKVIL +TLT++KL +P  FV N+G ++   +V L +P GA W + L+K +GK++F +GW EFV FYS++  YFL F+  G  CF V+IF
Subjt:  NLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIF

Query:  DKSCLEIKYP-------MPIKREIEVFEDREILDS---KKRSRKK
        D S  EI YP       +P  R  +  E  +IL+    KKR  +K
Subjt:  DKSCLEIKYP-------MPIKREIEVFEDREILDS---KKRSRKK

A0A6J1DVA1 B3 domain-containing transcription factor VRN1-like5.5e-2854.78Show/hide
Query:  NLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIF
        + F S TP+FFK+IL + L + KL +P  FV N+G +L      L++PSGA+W V L+K +GKVWFG+GW EFV FYS+K  YF+ FRY+GN CF VVIF
Subjt:  NLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIF

Query:  DKSCLEIKYPMPIKR
        D S  E+ YP+P+KR
Subjt:  DKSCLEIKYPMPIKR

A0A6J1E0D8 B3 domain-containing protein At4g01580-like1.6e-3555.42Show/hide
Query:  MASSSRCNL---FQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYD
        MASSSR +    F S TP+FFKVILP  LT+ KL VP  FV+ HGEALQ EEV LKV +GA+W VG+EK NGKVWF KGW +FV FYSI   YFLTFRY+
Subjt:  MASSSRCNL---FQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYD

Query:  GNFCFFVVIFDKSCLEIKYPM----PIKREIEVFEDREILDSKKRSRK------KHVAHKGKAKFT
         N CF V IFD S  EI+YPM     I+ E E FED+ ++  ++R  K        VAH  K K +
Subjt:  GNFCFFVVIFDKSCLEIKYPM----PIKREIEVFEDREILDSKKRSRK------KHVAHKGKAKFT

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like2.6e-3363.56Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TL + KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like3.3e-3363.56Show/hide
Query:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF
        MASS     F+S TP+FFKVILP+TL + KLA+P  FV  HGEAL+TEEV LKV SGA+W VGL K + K+WF KGW EFV FYS++  +FLTFRY+GN 
Subjt:  MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNF

Query:  CFFVVIFDKSCLEIKYPM
        CF VVIFDK+  EI+YP+
Subjt:  CFFVVIFDKSCLEIKYPM

SwissProt top hitse value%identityAlignment
Q10Q26 B3 domain-containing protein Os03g02123003.6e-0833.65Show/hide
Query:  FFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQ--WIVGL--EKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL
        FF++ILP + +K KL +P  F    G+  +  E  L+V    +  W V +  + ++G V+ G+GW EF   + ++  +FL FRYDG   F V +FD++  
Subjt:  FFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQ--WIVGL--EKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL

Query:  EIKY
           Y
Subjt:  EIKY

Q84R27 B3 domain-containing protein At3g189603.6e-1637.1Show/hide
Query:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS
        +SP   FFK++LP T+  + + +P  FV   G  L +E V L+ P+G +  + L++I  ++WF +GW+EF   +SI+  +FL F Y  N  F V+IF+ S
Subjt:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS

Query:  CLEIKYPMPIKREIEVFEDREILD
          E KYP+     I+   D +I+D
Subjt:  CLEIKYPMPIKREIEVFEDREILD

Q8L3W1 B3 domain-containing transcription factor VRN19.4e-1746.15Show/hide
Query:  PTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL
        P P F K+I   T+ +++L VP  FV+   + L    V L VP G  W VGL K + K+WF  GW EFV  YSI+  Y L FRY+GN  F V IF+ S  
Subjt:  PTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL

Query:  EIKY
        EI Y
Subjt:  EIKY

Q9XIB4 B3 domain-containing protein At1g494752.6e-1437.5Show/hide
Query:  ASSSRCNLFQSPTP---NFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDG
        +++++  L   P P    F K+IL   + ++ + VP  FV   G  L T+ V L+ P G +  + +++I  +VWF KGW+EF   +S+   +FL F Y+G
Subjt:  ASSSRCNLFQSPTP---NFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDG

Query:  NFCFFVVIFDKSCLEIKYPM
        + CF VVIFD S  EI+YP+
Subjt:  NFCFFVVIFDKSCLEIKYPM

Q9ZSH7 B3 domain-containing protein At4g015805.2e-1533.58Show/hide
Query:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS
        +SP   FFK++LP T+  + + +P  FV   G  L +E V L  P+G +  + L++I  ++WF +GW+EF   +SI+  +FL F Y  N  F V+IF+ S
Subjt:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS

Query:  CLEIKYPMPIKREIEVFED-----REILDSKKRSRKK
          E  YP+     I+  +D      +  D++ +S+K+
Subjt:  CLEIKYPMPIKREIEVFED-----REILDSKKRSRKK

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein1.8e-1537.5Show/hide
Query:  ASSSRCNLFQSPTP---NFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDG
        +++++  L   P P    F K+IL   + ++ + VP  FV   G  L T+ V L+ P G +  + +++I  +VWF KGW+EF   +S+   +FL F Y+G
Subjt:  ASSSRCNLFQSPTP---NFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDG

Query:  NFCFFVVIFDKSCLEIKYPM
        + CF VVIFD S  EI+YP+
Subjt:  NFCFFVVIFDKSCLEIKYPM

AT3G18960.1 AP2/B3-like transcriptional factor family protein2.5e-1737.1Show/hide
Query:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS
        +SP   FFK++LP T+  + + +P  FV   G  L +E V L+ P+G +  + L++I  ++WF +GW+EF   +SI+  +FL F Y  N  F V+IF+ S
Subjt:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS

Query:  CLEIKYPMPIKREIEVFEDREILD
          E KYP+     I+   D +I+D
Subjt:  CLEIKYPMPIKREIEVFEDREILD

AT3G18990.1 AP2/B3-like transcriptional factor family protein6.7e-1846.15Show/hide
Query:  PTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL
        P P F K+I   T+ +++L VP  FV+   + L    V L VP G  W VGL K + K+WF  GW EFV  YSI+  Y L FRY+GN  F V IF+ S  
Subjt:  PTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSCL

Query:  EIKY
        EI Y
Subjt:  EIKY

AT4G01580.1 AP2/B3-like transcriptional factor family protein3.7e-1633.58Show/hide
Query:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS
        +SP   FFK++LP T+  + + +P  FV   G  L +E V L  P+G +  + L++I  ++WF +GW+EF   +SI+  +FL F Y  N  F V+IF+ S
Subjt:  QSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS

Query:  CLEIKYPMPIKREIEVFED-----REILDSKKRSRKK
          E  YP+     I+  +D      +  D++ +S+K+
Subjt:  CLEIKYPMPIKREIEVFED-----REILDSKKRSRKK

AT5G18090.1 AP2/B3-like transcriptional factor family protein4.8e-0832.08Show/hide
Query:  PNFFKVILPETLTKEKL-AVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWF--GKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSC
        P FFK++    L+ E +  +PLNF+ +  E   + ++ LKV  G+ W + + + N   +F   KGW++F++   + +  FLTF + GN CF V I+    
Subjt:  PNFFKVILPETLTKEKL-AVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWF--GKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKSC

Query:  LEIKYP
         E+  P
Subjt:  LEIKYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCTTCAAGATGCAACCTCTTTCAGTCCCCCACTCCCAACTTCTTTAAGGTCATCCTTCCTGAAACCCTCACCAAGGAAAAGCTTGCTGTTCCATTAAATTT
TGTAAATAATCATGGGGAGGCATTGCAAACTGAAGAAGTATGTCTTAAAGTTCCAAGTGGGGCACAATGGATAGTGGGATTAGAAAAAATTAATGGCAAAGTTTGGTTTG
GAAAAGGGTGGAATGAGTTTGTAACATTTTACTCTATTAAATCTTTTTACTTCTTAACATTTAGATATGATGGCAACTTTTGTTTCTTTGTTGTTATATTTGACAAAAGT
TGTTTAGAGATTAAATATCCAATGCCTATCAAAAGAGAGATTGAAGTATTTGAAGACAGAGAAATATTGGATAGCAAGAAGAGATCAAGAAAGAAACATGTGGCTCATAA
GGGTAAGGCTAAATTTACTTTTTATTTTCTTTTGTTCTTTTTAAAAGTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCTTCAAGATGCAACCTCTTTCAGTCCCCCACTCCCAACTTCTTTAAGGTCATCCTTCCTGAAACCCTCACCAAGGAAAAGCTTGCTGTTCCATTAAATTT
TGTAAATAATCATGGGGAGGCATTGCAAACTGAAGAAGTATGTCTTAAAGTTCCAAGTGGGGCACAATGGATAGTGGGATTAGAAAAAATTAATGGCAAAGTTTGGTTTG
GAAAAGGGTGGAATGAGTTTGTAACATTTTACTCTATTAAATCTTTTTACTTCTTAACATTTAGATATGATGGCAACTTTTGTTTCTTTGTTGTTATATTTGACAAAAGT
TGTTTAGAGATTAAATATCCAATGCCTATCAAAAGAGAGATTGAAGTATTTGAAGACAGAGAAATATTGGATAGCAAGAAGAGATCAAGAAAGAAACATGTGGCTCATAA
GGGTAAGGCTAAATTTACTTTTTATTTTCTTTTGTTCTTTTTAAAAGTTGTGTAA
Protein sequenceShow/hide protein sequence
MASSSRCNLFQSPTPNFFKVILPETLTKEKLAVPLNFVNNHGEALQTEEVCLKVPSGAQWIVGLEKINGKVWFGKGWNEFVTFYSIKSFYFLTFRYDGNFCFFVVIFDKS
CLEIKYPMPIKREIEVFEDREILDSKKRSRKKHVAHKGKAKFTFYFLLFFLKVV