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Sed0013921 (gene) of Chayote v1 genome

Gene IDSed0013921
OrganismSechium edule (Chayote v1)
DescriptionRab5-interacting
Genome locationLG05:40452983..40457072
RNA-Seq ExpressionSed0013921
SyntenySed0013921
Gene Ontology termsGO:0006996 - organelle organization (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010742 - Rab5-interacting protein
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143124.1 uncharacterized protein RAB5IF homolog [Cucumis sativus]3.3e-6292.25Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AV+LGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_008464121.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]2.5e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_022947918.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]1.9e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLLWG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_023532324.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo]2.5e-6292.25Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLLWG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWIL+YSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_038900616.1 respirasome Complex Assembly Factor 1-like [Benincasa hispida]1.1e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKE+KPVKFNLHQHQ+H NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
TrEMBL top hitse value%identityAlignment
A0A0A0KFE5 Uncharacterized protein1.6e-6292.25Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AV+LGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A1S4E4J0 uncharacterized protein C20orf24 homolog1.2e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A5D3DK85 Rab5-interacting1.2e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLLWGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A6J1D489 uncharacterized protein C20orf24 homolog2.7e-6293.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQEH NGH APFKLAKLFD EASWDKDQLGD+LHWIRQ++AVVLGLLWGSIPLVGGIWF+IFLVISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAW LVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A6J1G7Y2 uncharacterized protein C20orf24 homolog isoform X29.3e-6393.02Show/hide
Query:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLLWG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
SwissProt top hitse value%identityAlignment
Q9BUV8 Respirasome Complex Assembly Factor 15.9e-1436.04Show/hide
Query:  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG       +K+   +A+W DKD+  D+++W RQ +AVVLG++WG +PL G +    F +I+   +Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAH
        +     ++  H
Subjt:  LAWILVYSLAH
Q9CQT9 Respirasome Complex Assembly Factor 15.7e-1737.5Show/hide
Query:  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG       +K+   +A+W DKD+  D+++W RQ +A+VLG++WG +PL G +    F +I+   +Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAHF
        + WI+ Y+  H+
Subjt:  LAWILVYSLAHF
Arabidopsis top hitse value%identityAlignment
AT2G29020.1 Rab5-interacting family protein2.1e-4666.17Show/hide
Query:  MKEAKPVKFNLHQHQE----HPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEE
        MKE K  K +  Q Q     H N H   F  AKLFD EASWDKDQLGD+LHWIRQ + ++ GLLWG+IPLVGGIW L+FL IS+  VYGYYA++LK+DEE
Subjt:  MKEAKPVKFNLHQHQE----HPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEE

Query:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
        +FGGH ALLQ+GLFAS++LFLLAWILVYSL+ F
Subjt:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
AT5G59410.1 Rab5-interacting family protein5.0e-5375.38Show/hide
Query:  MKEAKPVKFN-LHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFG
        MKE+K  K N L Q + H N H +P KLAKLFDP+ASWDKDQLGD+LHWIRQ + ++ GLLWGSIPLVGGIW ++FL IS+  VYGYYAMILKVDEE+FG
Subjt:  MKEAKPVKFN-LHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFG

Query:  GHGALLQEGLFASITLFLLAWILVYSLAHF
        GH ALLQEGLFAS+TLFLLAWILVYSLAHF
Subjt:  GHGALLQEGLFASITLFLLAWILVYSLAHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGCGAAACCGGTTAAGTTCAATCTCCATCAGCATCAAGAGCACCCAAATGGCCACTTTGCCCCCTTCAAGCTCGCCAAATTGTTCGATCCAGAGGCCTCATG
GGACAAGGACCAGTTAGGAGATATTTTGCACTGGATTCGACAATCAATGGCCGTTGTTCTCGGACTGCTTTGGGGCTCCATACCCTTGGTTGGAGGCATTTGGTTTCTAA
TTTTCCTTGTGATATCGACCAGTGCTGTATATGGATATTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGCCATGGAGCTCTTCTCCAAGAGGGGCTTTTT
GCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCTCACTTTTGA
mRNA sequenceShow/hide mRNA sequence
AAATAAGGTTAGAATTCGCCAAGAACAACAAATTTCCAACAAAAAAAAAAAAAAAAAAGAAGAAGAAAAAGGCAGTAATCTTGTTCGGCGATAAACTCGAAGCTGAAGAA
ATCACAGGAGAGAAAGATACATTGTTGTTTTGCAGCACTATTTTTTTACGGCCAATAAATCCTGCAAATTGAAGTTGCTTCTTCATCAATCCAATCGTGTCTCCATCGTT
TTCCCTGAAAACCCTAGACGAGTTTCTGTTCTTAGTGTCGCCGGAATCTAGATCTGAGCTTGCCGCAGATTCATCGATTTCTCTGTTCCTTTTAGTTTTCCGGCGACTGA
TTGATCGGATTATCCGGTATGAAAGAAGCGAAACCGGTTAAGTTCAATCTCCATCAGCATCAAGAGCACCCAAATGGCCACTTTGCCCCCTTCAAGCTCGCCAAATTGTT
CGATCCAGAGGCCTCATGGGACAAGGACCAGTTAGGAGATATTTTGCACTGGATTCGACAATCAATGGCCGTTGTTCTCGGACTGCTTTGGGGCTCCATACCCTTGGTTG
GAGGCATTTGGTTTCTAATTTTCCTTGTGATATCGACCAGTGCTGTATATGGATATTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGCCATGGAGCTCTT
CTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCTCACTTTTGATCAGCAAAGAACGATTTTTCATCTATGAAATT
ACTTGGTGATGTTCGAACAATGAACTTAGTTATACATATACTTGATACCCTGCTCATTTGTGTTTGCTTCTAATTGACGGCACAATTTTTGTTAACATTCATGATGTTGA
ACATATTGATTTTAGCAAAGCAGGAAAGTTTTAGCATCTGAATGATATGTGATGATAGATTTTCAATCTCCATCTCCTTGTAGACACTTTTTTATGGAATCAACGCATCT
TATTGGGGCATCAATTAATAGCTAGGTGCTTGAGGTTGAAGTTTAGCTGAACATTAACAAAGTAGTGTACATCTGATAATTGGGTTGTTGTAAGTATATTACTAGCTGGG
GGTATCTTGGGATTAGTAGTAAGGGTACTAGTTGTATTTAGGCACCTCATTTCTGAATGTCTTCGTTTGTTCTGCACATCCTAAGAGAAGCCAGCAAGCAGTGTATGCCT
TGGAAAATCTTTGAATGTGGTAAAAGGATACTAATCACAGTATAACATTACTGTTATTATTTTATATCTGTGAATGTTTGGGTCAGCTTGCATAGAACTCGTCTATTCTC
ACTGGATATATCATTTGACCCTACAATATTTGAATGTCAATGAAACTTTTAAAAAATCATTTCCCAAGCAGGGTACCAACATTAATTGAAATCATCTATTAAATTCCCAA
GATTTTTTTCGCTAAAATAAGCGGTGAAATAGTACTTGATTGGAACTTGACGTTATAAAACCATTGAGAAGGAAGAAATTTCTTTTTCTTTCTTTCGCTTGGTGTAGCTT
TCCTCTTTTTTTTAGGGAAAAAGGGGAAGACACGCTGCTAACTGCCAGGACATAACATCGGTACGTATTTGAATCTTTGATATATTTTTGTAGCTAACTAGCTTTTGTTG
GTTGTTCTACGATTAGAAGTGGATGATTAAAATACACAACCTCTATGTTAAGAGCGTACATACTTATGTTGATTGACCTATTATTCTTGTTGGCGGGTTGTCTTAGCTTT
CTTCATTAAAATCTTCCGAAGGCCTATGGTATTCTTTTCTGAAGTTCAAAGGAGAATTTTGTGATAATTTAATCAAATGACTTCAGTTTCTGTATGCTAGAAACATAGGA
GATCAATAGTTTCTAAGTCCATAGTCCTTTTTTTATTCTAACATGTGATGGGTACTGATTCGTGTTGGCAATGGAGTTGCAACTTCTCGTGTCGTTTACCAGCTTAGATG
ATTATGCAATCTCTAAACTTTATGCTCCATGTCTGATTGTCTGAATATTCAAGAAATTGAATTGTTTATGATTACCTGCTGGAGCTTGTGGAACAATAGAAATAAAACGG
AACATAATTGAAATCTGTTGGCTTCGAATGCCTTACTGGAGCATGATGTTCGTTGGAAGAGCTTCTCTGAGTTCTTATGATCAATGCTATTCGTTATTGGTAATAGCATT
GATCATAGTAACTGATAGCCTCCGAATTCTGGCGTGCTGAAATTGAACATTGATGTGCTTGTACATGGGATTGCTTTCGAGGGACCACTTAGGATCAGTCACTTCAGCAA
CATCTTTCTGCTTTGATGGTGATTTTTCTCCCTTGTATGCTGAATACGAGGCTTTGTTGTGTGGAATGCAGAAAGTCCAACGGTAGAGTTCATTGCCTGTAGCAGTCGGA
TCCGATTGCGTGGGCTTAGCAATGGCGATCTAGCAGTGCAAGGGGGTATGTTCGGGGTGACGTCTGTGATAGTTTCTTGTAATACTTGGATGTCTCATTCGAATGTATCC
CCAGACAATGAACTAGCTGCATTTACTTTGAGAACCAAATCCAACAAGGTCTGTATTGTCTCTAGACTTCTTGTCTTGTAGCCCCACTGGGCAATGATATTATCTAAATA
AAGTTGCCATCTTATTCTAAAA
Protein sequenceShow/hide protein sequence
MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLF
ASITLFLLAWILVYSLAHF