; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013923 (gene) of Chayote v1 genome

Gene IDSed0013923
OrganismSechium edule (Chayote v1)
DescriptionDNA topoisomerase I
Genome locationLG10:19670402..19670694
RNA-Seq ExpressionSed0013923
SyntenySed0013923
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006265 - DNA topological change (biological process)
GO:0006338 - chromatin remodeling (biological process)
GO:0007059 - chromosome segregation (biological process)
GO:0005694 - chromosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003917 - DNA topoisomerase type I activity (molecular function)
InterPro domainsIPR011010 - DNA breaking-rejoining enzyme, catalytic core
IPR014727 - DNA topoisomerase I, catalytic core, alpha/beta subdomain
IPR018521 - DNA topoisomerase I, active site
IPR025834 - Topoisomerase I C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2059363.1 hypothetical protein ES319_A11G297100v1 [Gossypium barbadense]1.2e-2898.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

MBA0716522.1 hypothetical protein [Gossypium laxum]1.2e-2898.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

TYG47376.1 hypothetical protein ES288_D11G333200v1 [Gossypium darwinii]1.2e-2898.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

XP_016684952.1 DNA topoisomerase 1 alpha [Gossypium hirsutum]1.2e-2898.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

XP_039072279.1 DNA topoisomerase 1 alpha-like isoform X2 [Hibiscus syriacus]1.2e-2898.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

TrEMBL top hitse value%identityAlignment
A0A1U8J3R4 DNA topoisomerase I5.7e-2998.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

A0A1U8M0M5 DNA topoisomerase I5.7e-2998.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

A0A5D2CVC7 DNA topoisomerase I5.7e-2998.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

A0A5D2GSE6 DNA topoisomerase I5.7e-2998.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

A0A5J5RPE8 DNA topoisomerase I5.7e-2998.44Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDPDFRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

SwissProt top hitse value%identityAlignment
P30181 DNA topoisomerase 1 alpha2.1e-2889.06Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P++RF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

P30189 DNA topoisomerase 11.4e-1658.46Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDV-DPDFRF
        +E     +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+   KF WA+ + D ++RF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDV-DPDFRF

P93119 DNA topoisomerase 16.7e-2789.06Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDV   FRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

Q54RC3 DNA topoisomerase 16.3e-1770.18Show/hide
Query:  KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        K++LKTVALGTSKINYLDPRITVAWCK+++VP++KIF KSL  KF W+ DV  D+ F
Subjt:  KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

Q9FJ79 DNA topoisomerase 1 beta2.9e-3092.19Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDVDP+FRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

Arabidopsis top hitse value%identityAlignment
AT4G26701.1 DNA binding;DNA topoisomerase type Is1.9e-2989.06Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKEDLKTVALGTSKINY+DPRITVAWCKRHE PIEKIFNKSLL KF+WAMDV+P F F
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

AT5G55300.1 DNA topoisomerase I alpha1.5e-2989.06Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P++RF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

AT5G55300.2 DNA topoisomerase I alpha4.8e-2890.16Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPD
        MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P+
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPD

AT5G55300.3 DNA topoisomerase I alpha1.5e-2989.06Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P++RF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

AT5G55310.1 DNA topoisomerase 1 beta2.1e-3192.19Show/hide
Query:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF
        MERDMQTKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDVDP+FRF
Subjt:  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGAGATATGCAGACTAAAGAGGATTTGAAAACTGTGGCATTGGGCACATCGAAGATCAACTACCTTGATCCTCGAATCACAGTTGCATGGTGCAAGCGTCATGA
AGTCCCGATCGAAAAGATATTCAATAAGTCTCTTCTAGCTAAGTTTTCTTGGGCAATGGACGTGGATCCCGACTTCAGATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGAGATATGCAGACTAAAGAGGATTTGAAAACTGTGGCATTGGGCACATCGAAGATCAACTACCTTGATCCTCGAATCACAGTTGCATGGTGCAAGCGTCATGA
AGTCCCGATCGAAAAGATATTCAATAAGTCTCTTCTAGCTAAGTTTTCTTGGGCAATGGACGTGGATCCCGACTTCAGATTCTGA
Protein sequenceShow/hide protein sequence
MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF