; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014011 (gene) of Chayote v1 genome

Gene IDSed0014011
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL16-like
Genome locationLG06:643689..651955
RNA-Seq ExpressionSed0014011
SyntenySed0014011
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571005.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]9.7e-0731.02Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH
        LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L SL I A ASE+I+A + S  LQ   +E+ + +   V  + 
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH

Query:  GSEETIL-----VP--------IDKSEKKEE-------------EGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
           E+       VP        +++ E  EE             E EE+++E+DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  GSEETIL-----VP--------IDKSEKKEE-------------EGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

XP_016899530.1 PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo]3.4e-0435.66Show/hide
Query:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC
        I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +         G+EET++     P  K    +  GE    ++  +DLGDC
Subjt:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC

Query:  SICLDQILNCQNMDAVRILPCGHAYHKSC
        SICLD+ L+C+  + +RI PCGH YH+SC
Subjt:  SICLDQILNCQNMDAVRILPCGHAYHKSC

XP_022944063.1 RING-H2 finger protein ATL16-like [Cucurbita moschata]1.8e-0529.73Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS-
        LEI    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L SL I A ASE+I+A + S  LQ   + N T +   AV+  
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS-

Query:  --------------IHGSEETI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
                      + G    +        +   +   + E+   E+++E+DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  --------------IHGSEETI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

XP_022985641.1 RING-H2 finger protein ATL16-like [Cucurbita maxima]3.1e-0529.57Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH
        LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I + L SL I A ASE+IAA + S  LQ   +E+ + +   V  + 
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH

Query:  GSEETIL-----VPIDKSEKKEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
           E+       VP+ +  +  EE                     E++++E DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  GSEETIL-----VPIDKSEKKEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

XP_023512244.1 RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]2.2e-0629.73Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH
        LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L SL + A ASE+I+A + S  LQ   +E+ + +   V  + 
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH

Query:  GSEETIL-----VPIDKS-----EKKE--------------EEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
           E+       VP+++      E++E              E+ E +++E+DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  GSEETIL-----VPIDKS-----EKKE--------------EEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

TrEMBL top hitse value%identityAlignment
A0A0A0LW68 RING-type domain-containing protein3.7e-0430.77Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLP---VHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVL
        LEI R +  S  L      +I++   P  + YD N + L     H   E   +F   +     SL I + ASE +A ++  LI      EN+   F   +
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLP---VHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVL

Query:  SIHGSEETILVPIDKSEKKEEEGEEDDDE-----DDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
         I     T + P+  S ++    E    E     +DLGDCSICLD+ L+  N + V  + CGH YH+ C
Subjt:  SIHGSEETILVPIDKSEKKEEEGEEDDDE-----DDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like1.7e-0435.66Show/hide
Query:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC
        I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +         G+EET++     P  K    +  GE    ++  +DLGDC
Subjt:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC

Query:  SICLDQILNCQNMDAVRILPCGHAYHKSC
        SICLD+ L+C+  + +RI PCGH YH+SC
Subjt:  SICLDQILNCQNMDAVRILPCGHAYHKSC

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein1.7e-0435.66Show/hide
Query:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC
        I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +         G+EET++     P  K    +  GE    ++  +DLGDC
Subjt:  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH--------GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDC

Query:  SICLDQILNCQNMDAVRILPCGHAYHKSC
        SICLD+ L+C+  + +RI PCGH YH+SC
Subjt:  SICLDQILNCQNMDAVRILPCGHAYHKSC

A0A6J1FXN0 RING-H2 finger protein ATL16-like8.8e-0629.73Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS-
        LEI    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L SL I A ASE+I+A + S  LQ   + N T +   AV+  
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS-

Query:  --------------IHGSEETI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
                      + G    +        +   +   + E+   E+++E+DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  --------------IHGSEETI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

A0A6J1J8T7 RING-H2 finger protein ATL16-like1.5e-0529.57Show/hide
Query:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH
        LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I + L SL I A ASE+IAA + S  LQ   +E+ + +   V  + 
Subjt:  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIH

Query:  GSEETIL-----VPIDKSEKKEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC
           E+       VP+ +  +  EE                     E++++E DLG+CSICLD+ + C+  + +R  PCGH YH+SC
Subjt:  GSEETIL-----VPIDKSEKKEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATTACAAAGCTTTAATAAAGACGTCGACTCAATACAAGATAAACGTGAAGGGCAAGACAATTAGACGACATGTTGCTGAAGTACAATCGACGGATAAAGTTGT
TGGTCTTGAAATATCAAGATCGTTGTACTTTTCCACCAAACTGTTCATCGGAGTTTCGAACAAAATCCTTTACGTAAATGCGCCGTACGCAGTCGGCTATGATACGAACA
GCTATACCCTCCCGGTCCACAAACTTGACGAAGACCTAAAGACCTTCGAAGACTTAATCGAGGACTGGCTGTACTCGCTCTACATCACTGCCTCCGCTTCTGAGCTCATC
GCCGCGCATGTCGTTTCGTTGATCCTCCAATACTTTACCCAGGAAAACACGGAACTCGACTTCGATGCCGTGCTCTCTATCCACGGCAGCGAGGAAACCATCTTGGTGCC
GATCGACAAGTCGGAAAAGAAGGAAGAAGAAGGTGAGGAGGATGATGATGAGGATGATTTGGGAGATTGCAGCATTTGTTTGGATCAAATATTGAATTGTCAAAACATGG
ACGCCGTAAGGATCCTTCCATGCGGACATGCCTATCATAAATCATGTTCGAATGTTGGATGGAGGAGAGAAGACGTGCAGAGGCCGGCATCATTTCCGGTCGAGAGGCGG
CGAAATTGCTCTGCTAACGGGTCGCCGGAAATTGTATTGGAAGATGGCGAGAGAAATATGGAAGAAAGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAAGGTC
AAGTACAGAGGTTGGAGATGATGGGATGGGTTGCTTGGTGAACGTTGTGAAGGAAAAAGGAGTGGGACATGTGGCAGATGCTAGCTGGTGCAAGATGGAAAATAAAGGGA
AAGGAAAAATATCAGATCTAGGAGAAGAAAAACTCCTTTTTGGACCATTTGAAATTAAAATTTCACATAATAATAGCCATTTGAAGGGTGTGGGAAATGGGCCTGTGAGT
GGGCTTAGGAAAGTTGTTAAAATGGACAGTAAGAATGTTCAATCTAAGGTGGATTGCATGGAAGTTGGGCTAGGAAGAAAATTGGATAATTTAAAGTTAATTATGCCATT
TAAGGAAGTGGCATCGATAGTGCTTCAAAAAAAGCATATAGATAGCAGTCCCGAGAAGAATATTGGTGTAGGAGAGGCTAAAAAGTCCATGAAATCTGGGTGGGAGGAAA
AGGTGGGCAATTTGGAGGTTGTGTTGGAAAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGATTACAAAGCTTTAATAAAGACGTCGACTCAATACAAGATAAACGTGAAGGGCAAGACAATTAGACGACATGTTGCTGAAGTACAATCGACGGATAAAGTTGT
TGGTCTTGAAATATCAAGATCGTTGTACTTTTCCACCAAACTGTTCATCGGAGTTTCGAACAAAATCCTTTACGTAAATGCGCCGTACGCAGTCGGCTATGATACGAACA
GCTATACCCTCCCGGTCCACAAACTTGACGAAGACCTAAAGACCTTCGAAGACTTAATCGAGGACTGGCTGTACTCGCTCTACATCACTGCCTCCGCTTCTGAGCTCATC
GCCGCGCATGTCGTTTCGTTGATCCTCCAATACTTTACCCAGGAAAACACGGAACTCGACTTCGATGCCGTGCTCTCTATCCACGGCAGCGAGGAAACCATCTTGGTGCC
GATCGACAAGTCGGAAAAGAAGGAAGAAGAAGGTGAGGAGGATGATGATGAGGATGATTTGGGAGATTGCAGCATTTGTTTGGATCAAATATTGAATTGTCAAAACATGG
ACGCCGTAAGGATCCTTCCATGCGGACATGCCTATCATAAATCATGTTCGAATGTTGGATGGAGGAGAGAAGACGTGCAGAGGCCGGCATCATTTCCGGTCGAGAGGCGG
CGAAATTGCTCTGCTAACGGGTCGCCGGAAATTGTATTGGAAGATGGCGAGAGAAATATGGAAGAAAGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAAGGTC
AAGTACAGAGGTTGGAGATGATGGGATGGGTTGCTTGGTGAACGTTGTGAAGGAAAAAGGAGTGGGACATGTGGCAGATGCTAGCTGGTGCAAGATGGAAAATAAAGGGA
AAGGAAAAATATCAGATCTAGGAGAAGAAAAACTCCTTTTTGGACCATTTGAAATTAAAATTTCACATAATAATAGCCATTTGAAGGGTGTGGGAAATGGGCCTGTGAGT
GGGCTTAGGAAAGTTGTTAAAATGGACAGTAAGAATGTTCAATCTAAGGTGGATTGCATGGAAGTTGGGCTAGGAAGAAAATTGGATAATTTAAAGTTAATTATGCCATT
TAAGGAAGTGGCATCGATAGTGCTTCAAAAAAAGCATATAGATAGCAGTCCCGAGAAGAATATTGGTGTAGGAGAGGCTAAAAAGTCCATGAAATCTGGGTGGGAGGAAA
AGGTGGGCAATTTGGAGGTTGTGTTGGAAAGAAATTGA
Protein sequenceShow/hide protein sequence
MGDYKALIKTSTQYKINVKGKTIRRHVAEVQSTDKVVGLEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELI
AAHVVSLILQYFTQENTELDFDAVLSIHGSEETILVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSCSNVGWRREDVQRPASFPVERR
RNCSANGSPEIVLEDGERNMEESQKMQVVSSEFGKRSSTEVGDDGMGCLVNVVKEKGVGHVADASWCKMENKGKGKISDLGEEKLLFGPFEIKISHNNSHLKGVGNGPVS
GLRKVVKMDSKNVQSKVDCMEVGLGRKLDNLKLIMPFKEVASIVLQKKHIDSSPEKNIGVGEAKKSMKSGWEEKVGNLEVVLERN