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Sed0014020 (gene) of Chayote v1 genome

Gene IDSed0014020
OrganismSechium edule (Chayote v1)
DescriptionTryptophan synthase beta type 2
Genome locationLG05:38144801..38145213
RNA-Seq ExpressionSed0014020
SyntenySed0014020
Gene Ontology termsGO:0009704 - de-etiolation (biological process)
GO:0071277 - cellular response to calcium ion (biological process)
GO:0090333 - regulation of stomatal closure (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY04331.1 Uncharacterized protein TCM_019614 [Theobroma cacao]9.6e-1372.46Show/hide
Query:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF
        MM   GR+VV+LK+K L+ LKMKK A YYDK+EKSESMR+EIRSRKA+KLI+ T+K ADSP TSKTYAF
Subjt:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF

KAG7036740.1 hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1581.97Show/hide
Query:  RIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYA
        R+VVNLKAKI+KSLKMKK    YDKMEKSESMR+EIRSRKAQKLIQ T+K ADSP+SKTYA
Subjt:  RIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYA

QHN83931.1 uncharacterized protein DS421_20g709010 [Arachis hypogaea]6.2e-1261.64Show/hide
Query:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF
        M  L R+V+ LK+KI++ L         K +YYYDK+EKSESMR+EIRSRKA+KLI++TLK ADSPTSKT+AF
Subjt:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF

QHO17494.1 uncharacterized protein DS421_10g312660 [Arachis hypogaea]2.1e-1263.01Show/hide
Query:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF
        M  L R+V+ LK+KI++ L      K  K +YYYDK+EKSESMR+EIRSRKA+KLI+ TLK ADSPTSKT+AF
Subjt:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF

RYQ78961.1 hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea]1.3e-1477.14Show/hide
Query:  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF
        M  LGR+VVNLK+KI KSLKM KKA  YYYDKMEKSESMR+EIRSRKA+KLI++TLK ADSP +SKTY F
Subjt:  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF

TrEMBL top hitse value%identityAlignment
A0A061EHJ2 Uncharacterized protein4.6e-1372.46Show/hide
Query:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF
        MM   GR+VV+LK+K L+ LKMKK A YYDK+EKSESMR+EIRSRKA+KLI+ T+K ADSP TSKTYAF
Subjt:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF

A0A1R3KFJ7 Uncharacterized protein3.0e-1269.57Show/hide
Query:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF
        MM  LGR+V +LK+K L+SLK KK   YYDK+EKSESMR+EIRSRKA+KLI  T+K ADSP  SKTYAF
Subjt:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF

A0A444X982 Uncharacterized protein3.0e-1261.64Show/hide
Query:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF
        M  L R+V+ LK+KI++ L         K +YYYDK+EKSESMR+EIRSRKA+KLI++TLK ADSPTSKT+AF
Subjt:  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF

A0A445DAW0 Uncharacterized protein6.5e-1577.14Show/hide
Query:  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF
        M  LGR+VVNLK+KI KSLKM KKA  YYYDKMEKSESMR+EIRSRKA+KLI++TLK ADSP +SKTY F
Subjt:  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSP-TSKTYAF

A0A6A2YYL4 Tryptophan synthase beta type 23.0e-1269.12Show/hide
Query:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF
        +M  +GR+VV+LK+K L+SLK  KK   YDK+EKSESMR+EIRSRKA+KLI+ TLK ADSPTSKT+AF
Subjt:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G19660.1 unknown protein8.7e-0441.54Show/hide
Query:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKT
        M   L  ++  +K+K+   L+ KKK Y   KM+KS S+R+ IR +K + LI  TLK AD P  +T
Subjt:  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTTGATTTAGGGAGGATAGTGGTGAATTTGAAAGCAAAGATTTTGAAGTCATTGAAGATGAAGAAGAAGGCTTATTATTATGATAAGATGGAGAAAAGTGAAAG
CATGAGAATTGAAATTAGAAGCAGAAAAGCCCAAAAGCTCATCCAAAACACCTTGAAATTTGCTGACTCTCCCACTTCTAAAACTTATGCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
AACCCACAAATTTTTATTTTCATTCTCAACTTCTCTCTGTTTATTGTCATTTTTGTTGTAAATTAATAGATTTTGGTGCAGGTAATTGGAAGGGAAAAGGAAAAGATTTT
GATGATGTTTGATTTAGGGAGGATAGTGGTGAATTTGAAAGCAAAGATTTTGAAGTCATTGAAGATGAAGAAGAAGGCTTATTATTATGATAAGATGGAGAAAAGTGAAA
GCATGAGAATTGAAATTAGAAGCAGAAAAGCCCAAAAGCTCATCCAAAACACCTTGAAATTTGCTGACTCTCCCACTTCTAAAACTTATGCTTTTTGATTATATATCTCT
TCCTCATAGGTAACAAAATTGGAGCCTAATTTGTTGTGGGTGTCTTCAATTTCAATGAGTTTTAGGCTTTTGGCTAAAACCCC
Protein sequenceShow/hide protein sequence
MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF