; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014080 (gene) of Chayote v1 genome

Gene IDSed0014080
OrganismSechium edule (Chayote v1)
DescriptionExosome complex component RRP42-like
Genome locationLG06:12604960..12607502
RNA-Seq ExpressionSed0014080
SyntenySed0014080
Gene Ontology termsGO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process (biological process)
GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034473 - U1 snRNA 3'-end processing (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034476 - U5 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588778.1 Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia]7.9e-10589.19Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPNAMQP KGKVSI VDCSP A+  FEGRGGEEL+TELSV LERCLLGGK+GAGAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEAS+NEQPEVD+SDE+FLQFDTS VP IVTLTKVGRHYIVDATLEEESQMSSAISIS+NRHGHVC
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGG GVDPS++LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

XP_004151651.2 exosome complex component RRP42 [Cucumis sativus]3.5e-10589.19Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPN MQP KGKVSISVDCSP A+ AFEGRGGEELSTELS+ LERCLLGGK+G+GAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  NEQPEVD+SDE+FLQFDTS VPAIVTLTKVG+HYIVDATLEEESQMSSA+SISI+RHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGGVGVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

XP_008441268.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo]3.5e-10588.29Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPN MQ +KGKVSISVDCSPIA+ AFEGRGGEELSTELSV LERCLLGGK+G+GAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLV+SS+GNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQPEVD+SDE+F+QF+TS VPAIVTLTKVG+HYI+DATLEEESQMSSA+SISINRHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGGVGVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

XP_022927940.1 exosome complex component RRP42 [Cucurbita moschata]2.3e-10488.74Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPNAMQP KGKVSI VDCSP A+  FEGRGGEEL+TELSV LERCLLGGK+GAGAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EAS+NEQPEVD+SDE+FLQFDTS VP IVTLTKVGRHYIVDATLEEESQMSSAISIS+NRHGHVC
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGG GVDPS++LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

XP_023529361.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo]7.9e-10589.19Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPNAMQP KGKVSI VDCSP A+  FEGRGGEEL+TELSV LERCLLGGK+GAGAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEAS+NEQPEVD+SDE+FLQFDTS VP IVTLTKVGRHYIVDATLEEESQMSSAISIS+NRHGHVC
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGG GVDPS++LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

TrEMBL top hitse value%identityAlignment
A0A0A0LU91 Uncharacterized protein1.7e-10589.19Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPN MQP KGKVSISVDCSP A+ AFEGRGGEELSTELS+ LERCLLGGK+G+GAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  NEQPEVD+SDE+FLQFDTS VPAIVTLTKVG+HYIVDATLEEESQMSSA+SISI+RHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGGVGVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

A0A1S3B3T5 exosome complex component RRP42-like1.7e-10588.29Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPN MQ +KGKVSISVDCSPIA+ AFEGRGGEELSTELSV LERCLLGGK+G+GAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLV+SS+GNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQPEVD+SDE+F+QF+TS VPAIVTLTKVG+HYI+DATLEEESQMSSA+SISINRHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGGVGVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

A0A5A7SRK6 Exosome complex component RRP42-like1.7e-10588.29Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPN MQ +KGKVSISVDCSPIA+ AFEGRGGEELSTELSV LERCLLGGK+G+GAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLV+SS+GNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQPEVD+SDE+F+QF+TS VPAIVTLTKVG+HYI+DATLEEESQMSSA+SISINRHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGGVGVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

A0A6J1C1R4 exosome complex component RRP422.5e-10488.74Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARVKMG TEVIA VKAELGRPNAMQP KGKVSISVDCSPIA+ AFEGRGGEELSTELSV L+RCLLGGK+GAGAGIDLSSLIVVEGK+CWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSS+GNLLD LGAAIKAALSNTGIPKV+VAAEAS+++QPEVDISDE+FLQFDTS VP IVTLTKVGRHYIVDATLEEESQM+SAISISINRHGH+C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        G+TKRGG GVDPSI+LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

A0A6J1EQ99 exosome complex component RRP421.1e-10488.74Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSARV+MG TEVIATVKAELGRPNAMQP KGKVSI VDCSP A+  FEGRGGEEL+TELSV LERCLLGGK+GAGAGIDLSSLIVVEGKLCWDLYI
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        EGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EAS+NEQPEVD+SDE+FLQFDTS VP IVTLTKVGRHYIVDATLEEESQMSSAISIS+NRHGHVC
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
        GLTKRGG GVDPS++LDMIS G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

SwissProt top hitse value%identityAlignment
O26778 Exosome complex component Rrp422.2e-2533.18Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S A GS+RVK+G T++I  VK ++G P    P  G +  + +  P+A   FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        +  ++  DGNL DA   A  AAL +T IP   V       E  EV I+ E       +R   + T  K+G   ++D +LEEE  +++ ISI +   G +C
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMIS
         + K G   +    VL  +S
Subjt:  GLTKRGGVGVDPSIVLDMIS

Q15024 Exosome complex component RRP422.5e-3737.84Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S  +GSARVK+G T+++  VKAE+G P   +P++G +   VDCS  A   FEGRGG++L TE++  L R +   K    + +DL +L +   + CW LY+
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        + L++   GNL DA+  A+KAAL NT IP+V V  +   ++  E+     D ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G V 
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISAG
         + K G   +DP  + +M+  G
Subjt:  GLTKRGGVGVDPSIVLDMISAG

Q54VM4 Putative exosome complex exonuclease RRP426.0e-3134.23Show/hide
Query:  ANGSARVKMGRTEVIATVKAELGR------PNAMQPHKGK-VSISVDCSPIADQAFEGRGGEELSTELSVGLERC---------------LLGGKNGAGA
        ANGSARVK+ +TEV+  VKAE+         N  Q    K +  SV+C P A   FEG+G E L+ ELS  LER                ++   N    
Subjt:  ANGSARVKMGRTEVIATVKAELGR------PNAMQPHKGK-VSISVDCSPIADQAFEGRGGEELSTELSVGLERC---------------LLGGKNGAGA

Query:  GI--------------------DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRV
         I                    D +   +V GK  W LY++ +V+ SDGNL DAL  A ++AL NT IP+V            EV    ED L      V
Subjt:  GI--------------------DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRV

Query:  PAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGLTKRGGVGVDPSIVLDMIS
        P  VTLTK+G  +++D TL+EE  M++ +++ +N   ++C + K G  G+DP+ +  MI+
Subjt:  PAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGLTKRGGVGVDPSIVLDMIS

Q8TYC2 Exosome complex component Rrp429.0e-2734.1Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S ANGSA V++G T+++  VK E+GRP    P++G ++++ +  P+AD +FE    +E + ELS  ++R +   +      IDL  L + EG+ CW  ++
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        +  V+  DGNL DA      +ALS T +PK  V  +       EV++ +ED      +  P  VT+ KVG + +VD  LEEE  M + +++++   G VC
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLD
         + K G +G  P  +L+
Subjt:  GLTKRGGVGVDPSIVLD

Q9D0M0 Exosome complex exonuclease RRP422.1e-3638.01Show/hide
Query:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI
        S  +GSARVK+G T+++  VKAE+G P   +P++G +   VDCS  A   FEGRGG++L TE++  L R +   K    + +DL SL +   + CW LY+
Subjt:  SLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYI

Query:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC
        + L++   GNL DA+  A+KAAL NT IP+V V  +    +  E+     D ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G V 
Subjt:  EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVC

Query:  GLTKRGGVGVDPSIVLDMISA
         + K G   +DP  + +M+ +
Subjt:  GLTKRGGVGVDPSIVLDMISA

Arabidopsis top hitse value%identityAlignment
AT3G07750.1 3'-5'-exoribonuclease family protein1.9e-9374.31Show/hide
Query:  ANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEG
        ANGSARV++G T+VIA+VKAE+GRP+++QP KGKV++ +DCSP A+  F GRGGEELS+EL++ L+RCLLGGK+GAGAGI+LSSL++ EGK+CWDLYI+G
Subjt:  ANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEG

Query:  LVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGL
        LV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +EQPE+DISDE++LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSA+SIS+NR GH+CGL
Subjt:  LVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGL

Query:  TKRGGVGVDPSIVLDMIS
        TKR G G+DPS++LDMIS
Subjt:  TKRGGVGVDPSIVLDMIS

AT3G07750.2 3'-5'-exoribonuclease family protein1.9e-9374.31Show/hide
Query:  ANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEG
        ANGSARV++G T+VIA+VKAE+GRP+++QP KGKV++ +DCSP A+  F GRGGEELS+EL++ L+RCLLGGK+GAGAGI+LSSL++ EGK+CWDLYI+G
Subjt:  ANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEG

Query:  LVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGL
        LV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +EQPE+DISDE++LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSA+SIS+NR GH+CGL
Subjt:  LVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRHGHVCGL

Query:  TKRGGVGVDPSIVLDMIS
        TKR G G+DPS++LDMIS
Subjt:  TKRGGVGVDPSIVLDMIS

AT3G12990.1 ribonuclease PH45A1.7e-2030.22Show/hide
Query:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV
        GS++V++G+T V+A V A+L +P   +P +G  SI  + SP+AD +FE     E + EL   ++R L   +      +D  SL V+ GKL W + I+  +
Subjt:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV

Query:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV
        + + GNL+DA   A  AAL     P   V  + S +     PE    + + L      +P   T      G   ++D T  EE+ M   +++++N +G +
Subjt:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV

Query:  CGLTKRGGVGVDPSIVLDMISAGTS
        C + K G  GV+ S++L  +   +S
Subjt:  CGLTKRGGVGVDPSIVLDMISAGTS

AT3G12990.2 ribonuclease PH45A1.7e-2030.22Show/hide
Query:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV
        GS++V++G+T V+A V A+L +P   +P +G  SI  + SP+AD +FE     E + EL   ++R L   +      +D  SL V+ GKL W + I+  +
Subjt:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV

Query:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV
        + + GNL+DA   A  AAL     P   V  + S +     PE    + + L      +P   T      G   ++D T  EE+ M   +++++N +G +
Subjt:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV

Query:  CGLTKRGGVGVDPSIVLDMISAGTS
        C + K G  GV+ S++L  +   +S
Subjt:  CGLTKRGGVGVDPSIVLDMISAGTS

AT3G12990.3 ribonuclease PH45A1.7e-2030.22Show/hide
Query:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV
        GS++V++G+T V+A V A+L +P   +P +G  SI  + SP+AD +FE     E + EL   ++R L   +      +D  SL V+ GKL W + I+  +
Subjt:  GSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSSLIVVEGKLCWDLYIEGLV

Query:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV
        + + GNL+DA   A  AAL     P   V  + S +     PE    + + L      +P   T      G   ++D T  EE+ M   +++++N +G +
Subjt:  VSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSN---EQPEVDISDEDFLQFDTSRVPAIVT--LTKVGRHYIVDATLEEESQMSSAISISINRHGHV

Query:  CGLTKRGGVGVDPSIVLDMISAGTS
        C + K G  GV+ S++L  +   +S
Subjt:  CGLTKRGGVGVDPSIVLDMISAGTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAAGGAGACTCACTTATCGACCCATCTCTGTACAAACTGACGCCATCTCTCAGGCACAATCAAAACAGCCTCGCAAATGGTTCAGCAAGGGTCAAAATGGGTCG
TACGGAAGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCTATGCAGCCTCACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGACCAGG
CTTTTGAGGGTAGGGGCGGTGAAGAGTTGTCAACAGAACTCTCAGTTGGCCTTGAGCGATGTCTCTTAGGAGGAAAAAATGGTGCAGGGGCTGGGATTGACCTTTCATCT
CTAATAGTTGTGGAGGGGAAGCTTTGCTGGGATCTTTATATTGAAGGCCTTGTCGTAAGCTCAGACGGAAATCTTCTAGATGCCCTGGGTGCTGCCATTAAGGCTGCTTT
GAGCAATACAGGCATCCCAAAAGTCCACGTTGCTGCAGAAGCATCATCCAATGAACAACCCGAAGTTGACATAAGCGATGAAGATTTTCTACAGTTCGACACATCTAGGG
TTCCAGCCATAGTTACGTTGACAAAGGTGGGCAGGCACTACATCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGTTCTGCAATCTCCATATCCATCAACAGGCAC
GGTCATGTCTGTGGGTTGACCAAACGAGGAGGCGTCGGTGTTGATCCAAGCATAGTCCTCGACATGATATCCGCTGGCACGAGCAGTTACTAA
mRNA sequenceShow/hide mRNA sequence
GTAGGAATGGTGGGGCTTTCCATTGGAGAACAGCTTTTCATAGAGGGCGGCATTGCTCAGGACCTTCGCACGGATGGTCGAAGGAGACTCACTTATCGACCCATCTCTGT
ACAAACTGACGCCATCTCTCAGGCACAATCAAAACAGCCTCGCAAATGGTTCAGCAAGGGTCAAAATGGGTCGTACGGAAGTTATTGCTACTGTCAAGGCTGAACTTGGA
AGGCCTAATGCTATGCAGCCTCACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGACCAGGCTTTTGAGGGTAGGGGCGGTGAAGAGTTGTCAACAGA
ACTCTCAGTTGGCCTTGAGCGATGTCTCTTAGGAGGAAAAAATGGTGCAGGGGCTGGGATTGACCTTTCATCTCTAATAGTTGTGGAGGGGAAGCTTTGCTGGGATCTTT
ATATTGAAGGCCTTGTCGTAAGCTCAGACGGAAATCTTCTAGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCACGTTGCTGCA
GAAGCATCATCCAATGAACAACCCGAAGTTGACATAAGCGATGAAGATTTTCTACAGTTCGACACATCTAGGGTTCCAGCCATAGTTACGTTGACAAAGGTGGGCAGGCA
CTACATCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGTTCTGCAATCTCCATATCCATCAACAGGCACGGTCATGTCTGTGGGTTGACCAAACGAGGAGGCGTCG
GTGTTGATCCAAGCATAGTCCTCGACATGATATCCGCTGGCACGAGCAGTTACTAAACAAATTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGATTAA
AGCCTTTAGGAAAGATCTCTGATTGTTGTTCATTCACATTGTCGTCTTATGATGGCCATCTGGGTTGGAATTATTGTCTCGATGTTATAGATGTTCGTAAAGCCGCAATC
TTGTAAAATTGGCAGTTCTTCAGTCCTTTCATGGTATTTGATCCCAGTTTAGCTGAGTTTAAAATGCCCAGATGAAGGTATGTGTTGATTGAATGAAGTGCAATTGCAGG
TATTATGAACATGAATCTATTCAGAGCAAACTAAGATTCGTTGGTTTAGTCAAAATCAATGAACAAAAGAAATATGTTTTCGTTGATAATTTCGGCTATGTAAGAGAAAA
TCACAAAAACTAATATATT
Protein sequenceShow/hide protein sequence
MVEGDSLIDPSLYKLTPSLRHNQNSLANGSARVKMGRTEVIATVKAELGRPNAMQPHKGKVSISVDCSPIADQAFEGRGGEELSTELSVGLERCLLGGKNGAGAGIDLSS
LIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASSNEQPEVDISDEDFLQFDTSRVPAIVTLTKVGRHYIVDATLEEESQMSSAISISINRH
GHVCGLTKRGGVGVDPSIVLDMISAGTSSY