; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014118 (gene) of Chayote v1 genome

Gene IDSed0014118
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationLG13:4738325..4741349
RNA-Seq ExpressionSed0014118
SyntenySed0014118
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]7.0e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARGLPSL R S +FKV ASGGKKIKTDKPYGINGSM+LRDGVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]7.5e-6594.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK A+GLPSL RTS +FKVEASGGKKIKTDKPYGINGSM+LRDG+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]3.7e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARG+PSL R SG FKVEASGGKKIKTDKPYGINGSM+LRDGVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]1.3e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARG+PSL R SG FKVEASGGKKIKTDKPYGINGSM+LRDGVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.1e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK A+GLPSL R S  FKVEASGGKKIKTDKPYGINGSM+LRDG+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARGLPSL R S +FKV ASGGKKIKTDKPYGINGSM+LRDGVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARGLPSL R S +FKV ASGGKKIKTDKPYGINGSM+LRDGVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-6594.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK A+GLPSL RTS +FKVEASGGKKIKTDKPYGINGSM+LRDG+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic1.8e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARG+PSL R SG FKVEASGGKKIKTDKPYGINGSM+LRDGVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic1.8e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK ARG+PSL R SG FKVEASGGKKIKTDKPYGINGSM+LRDGVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic3.3e-5580.58Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPA-RGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK + +GLPSL R+S +FKV ASG KK+KTDKPYGINGSM+LRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEKPA-RGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-5380Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK  ARGLPSL R   +FK+ ASG KKIKTDKP+GINGSM LRDGVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-5279.43Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTS-GAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK  ARGLPSL R S  +F++ ASG KKIKTDKP+G+NGSM LRDGVDASGRKGKG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTS-GAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic5.6e-5580.58Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK   +GLPSL R+S +FKV ASG KK+KTDKPYGINGSM+LRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5682.73Show/hide
Query:  MAASVMTSVSLKPAPFTVEKPA-RGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK A +GLPSL R+S +F+V+ASG KK+KTDKPYGINGSMSLRDGVDASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKPA-RGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R3.7e-5480Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK  ARGLPSL R   +FK+ ASG KKIKTDKP+GINGSM LRDGVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-PARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACGTCGGTGAGTCTGAAACCAGCTCCGTTCACCGTCGAGAAACCGGCGAGAGGTCTTCCGTCGCTGGTGAGAACTTCCGGCGCATTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGCTCGATGAGTTTGAGGGACGGAGTTGATGCGTCGGGAAGGAAGGGAAAGGGCAAGG
GAGTGTACCAATTTGTCGACAAGTATGGGGCTAATGTTGATGGCTACAGTCCCATCTATGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGTACCACT
GGGTTAGCCATTTGGGCAGTGACCTTGGCTGGGCTTCTTGCTGGAGGAGCTCTTCTTGTCTACAACACCAGTGCTTTGGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATCGCAGATTTTCGAGCTTAAGCCGAAGAGGAAGAAGAAGCTTATTGATTGGAAATGGCGGCCTCGGTGATGACGTCGGTGAGTCTGAAACCAGCTCCGTTCACCGTCGA
GAAACCGGCGAGAGGTCTTCCGTCGCTGGTGAGAACTTCCGGCGCATTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGCT
CGATGAGTTTGAGGGACGGAGTTGATGCGTCGGGAAGGAAGGGAAAGGGCAAGGGAGTGTACCAATTTGTCGACAAGTATGGGGCTAATGTTGATGGCTACAGTCCCATC
TATGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCTGGGCTTCTTGCTGGAGGAGCTCTTCT
TGTCTACAACACCAGTGCTTTGGTGCAGTAAGCTGGAGGAAATTTTAAGTCTGGTTTTTTCTTTTTCCACATTAGCTTGTAGCATGTTATCATGAACAACTTTATTAGAA
TTTATCTGTGTAATTATCTGGATATTTATTTCATAAATGCTTGGAAACATAAGTTTTCTCCTTCTTGTT
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKPARGLPSLVRTSGAFKVEASGGKKIKTDKPYGINGSMSLRDGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALVQ