CuGenDBv2

Gene ID	Sed0014215
Organism	Sechium edule (Chayote v1)
Description	Protein Ycf2
Genome location	LG13:18741753..18744272
RNA-Seq Expression	Sed0014215
Synteny	Sed0014215
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

7.1e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

7.1e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

YP_009751696.1 Ycf2 protein [Hodgsonia heteroclita]

7.1e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

7.1e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

7.1e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

3.4e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

A0A6H0ESM3 Protein Ycf2

3.4e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

A0A6H0ET42 Protein Ycf2

3.4e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

A0A6H0EV63 Protein Ycf2

3.4e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

A0A6M3RUH1 Protein Ycf2

3.4e-49

100

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

9.6e-49

92.78

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+Q+GSCSI+DQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Q09MB4 Protein Ycf2

2.1e-48

93.81

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSLPGPDEKNGITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCSRFDNDRVTLLLRPEPRNPLDM+Q GSCSIVDQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Q0ZIV6 Protein Ycf2

1.1e-49

94.85

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSIVDQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Q3C1N4 Protein Ycf2

2.1e-48

92.78

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSI+DQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Q9B1K6 Protein Ycf2

2.1e-48

92.78

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAG+V QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLLRPEP NPL+MIQNGSCSIVDQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.9e-44

85.57

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.9e-44

85.57

Show/hide

Query:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES
        CSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQRFLYE+YES
Subjt:  CSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYES

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTTTCTATTTTTAGATACTTTTTCAGACCTATTTTTTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCT
TAGCCCTATCCCCTCTAGGGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCG
GACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACA
GAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCCAGGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCA
GAGATTTCTCTATGAACAATACGAATCAGGTTTGAAGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVPYFDRVQISKFSIFRYFFRPIFSFPISWKTLFAPLSPIPSRDTNIIRSALHRQTWDFCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRT
EKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESGLKKEKESSTRNR

Sed0014215 (gene) of Chayote v1 genome