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Sed0014310 (gene) of Chayote v1 genome

Gene IDSed0014310
OrganismSechium edule (Chayote v1)
DescriptionKeratin, type II cytoskeletal 1-like
Genome locationLG11:23533187..23533504
RNA-Seq ExpressionSed0014310
SyntenySed0014310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.5e-0435.56Show/hide
Query:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        + S L ++     I   GNK S+VKL +DN LLWK Q+ TAL  + L  F + + E P+K+L +  SS +   R  N   +  KR   ++
Subjt:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.9e-0438.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +   R  N   +  KR+  ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.6e-0638.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I   GNK S+VKL++DN LLWK Q+ TAL  + +  FL+ + E P K+L +  SS +   R  N   +E + E+ ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.9e-0438.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +   R  N   +  KR+  ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]4.9e-0844.29Show/hide
Query:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDS
        S++D  +   N  IVN GNK S +KL+++N LLW+LQ+TTAL+ HGL +F+  + ++P++F+ +A  S S
Subjt:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDS

TrEMBL top hitse value%identityAlignment
A0A5A7UB21 Keratin, type II cytoskeletal 1-like7.2e-0535.56Show/hide
Query:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        + S L ++     I   GNK S+VKL +DN LLWK Q+ TAL  + L  F + + E P+K+L +  SS +   R  N   +  KR   ++
Subjt:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like9.4e-0538.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +   R  N   +  KR+  ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0638.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I   GNK S+VKL++DN LLWK Q+ TAL  + +  FL+ + E P K+L +  SS +   R  N   +E + E+ ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like9.4e-0538.46Show/hide
Query:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL
        +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +   R  N   +  KR+  ++
Subjt:  KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASIL

A0A6J1E314 uncharacterized protein LOC1110255722.4e-0844.29Show/hide
Query:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDS
        S++D  +   N  IVN GNK S +KL+++N LLW+LQ+TTAL+ HGL +F+  + ++P++F+ +A  S S
Subjt:  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTCACCGCAGAGAAGCCAATCTGATCTAGTGTTAAAGACGGCAAATGAGAAGATCGTAAATATAGGAAACAAAACTTCCATTGTCAAATTGGATGAAGATAA
TGTCCTTCTATGGAAACTACAAGTCACCACAGCACTTCGAGAACATGGATTGCTAAGATTTCTAAAGGATAAAGATGAAGTCCCAGCGAAATTTCTGAATGCAGCAAGTT
CGTCTGATTCTGATGATGAACGAGTAGTAAATCAAGGGTGTGAAGAAAGGAAACGAGAAGCTAGTATACTACTTTGCGAAAATCAAGAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTCACCGCAGAGAAGCCAATCTGATCTAGTGTTAAAGACGGCAAATGAGAAGATCGTAAATATAGGAAACAAAACTTCCATTGTCAAATTGGATGAAGATAA
TGTCCTTCTATGGAAACTACAAGTCACCACAGCACTTCGAGAACATGGATTGCTAAGATTTCTAAAGGATAAAGATGAAGTCCCAGCGAAATTTCTGAATGCAGCAAGTT
CGTCTGATTCTGATGATGAACGAGTAGTAAATCAAGGGTGTGAAGAAAGGAAACGAGAAGCTAGTATACTACTTTGCGAAAATCAAGAATCTGGTTGA
Protein sequenceShow/hide protein sequence
MESSPQRSQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASILLCENQESG