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Sed0014353 (gene) of Chayote v1 genome

Gene IDSed0014353
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationLG03:39565889..39568023
RNA-Seq ExpressionSed0014353
SyntenySed0014353
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8540491.1 hypothetical protein F0562_024590 [Nyssa sinensis]1.7e-0844.83Show/hide
Query:  NFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNL---NFFPCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAAN
        N  K  PYS N+       S+   P+ P+ A     P PN +L   +  PCQIC K  H ALDCYH ++FSYQGR+PP++L A+AA+
Subjt:  NFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNL---NFFPCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAAN

KAF8390122.1 hypothetical protein HHK36_024644 [Tetracentron sinense]2.3e-0837.62Show/hide
Query:  NNSSSYNQGNFNKINPY---SYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFF-----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA
        +N   YN    N   PY   SY+Q   P +S       +P  + +  +P PNQ  + F     PCQIC K  H ALDC+H ++++YQGR+PP +L A+ A
Subjt:  NNSSSYNQGNFNKINPY---SYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFF-----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA

Query:  N
        +
Subjt:  N

KAF8393863.1 hypothetical protein HHK36_020061 [Tetracentron sinense]1.3e-0838.61Show/hide
Query:  NNSSSYNQGNFNKINPY---SYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQ-NLNFF----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA
        +N   YN+   N   PY   SY+Q   P +S       +P  + +  +P PNQ   +FF    PCQIC K  H ALDC+H ++++YQGR+PP +L A+ A
Subjt:  NNSSSYNQGNFNKINPY---SYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQ-NLNFF----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA

Query:  N
        +
Subjt:  N

RVW13866.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.0e-0939.8Show/hide
Query:  NNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFF-----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAAN
        +N   YN+   N   PY     S P+FS       +P  + +  +P PNQ  + F     PCQIC K  H ALDC+H++N++YQGR+PP +L A+ AN
Subjt:  NNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFF-----PCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAAN

XP_030941412.1 uncharacterized protein LOC115966296 [Quercus lobata]9.2e-1040.31Show/hide
Query:  NLSSMVMVAQHNSWR-GSNRGMGRNSGDRGRGNFNHNNSSSYNQGNFNKINP-YSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKY
        ++SS +    H  +  GS RG GRN+G+RGRG    NNS   +Q  F    P  +YN      F  Q     +    F N  P          CQIC K 
Subjt:  NLSSMVMVAQHNSWR-GSNRGMGRNSGDRGRGNFNHNNSSSYNQGNFNKINP-YSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKY

Query:  GHDALDCYHMLNFSYQGRYPPAKLVAIAA
        GH ALDCYH ++F YQG+ PP KLVA+A+
Subjt:  GHDALDCYHMLNFSYQGRYPPAKLVAIAA

TrEMBL top hitse value%identityAlignment
A0A2N9FT70 Reverse transcriptase Ty1/copia-type domain-containing protein3.1e-1141.48Show/hide
Query:  SMNLSSMVMVAQHN-----SWRGSNRGMGRNSGDRGRGN--FNHNNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFP
        S  L+ M MVA  N     S    NRG GRNS +RGRGN  F   N+   + GNFN          + P FS+    P N      +PN  P        
Subjt:  SMNLSSMVMVAQHN-----SWRGSNRGMGRNSGDRGRGN--FNHNNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFP

Query:  CQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIA
        CQIC K GH A+DCY  +N+++QGR+PPAKL A+A
Subjt:  CQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIA

A0A2N9H9M1 Uncharacterized protein4.8e-1247.11Show/hide
Query:  HNSWRG--SNRGMGRNSGDRGRGNFNHNNSSSY-NQGNFNKINPYSYNQGSTPTF--SSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYGHDALDC
        HN  RG   NRG G N G   RG +N +N   + + G +N+ +P ++ Q S P F  SS N    NPN +  NPN  PN       CQIC K GH+ALDC
Subjt:  HNSWRG--SNRGMGRNSGDRGRGNFNHNNSSSY-NQGNFNKINPYSYNQGSTPTF--SSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYGHDALDC

Query:  YHMLNFSYQGRYPPAKLVAIA
        Y+ +N+SYQGR+PPAKL A+A
Subjt:  YHMLNFSYQGRYPPAKLVAIA

A0A2N9INQ9 Uncharacterized protein1.8e-1142.19Show/hide
Query:  NLSSMVMVAQHNSWRGSNRGMGRNSGDRGRGNFNHNN-SSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYG
        N SS      HN+    NRG GRN+  RGRG F+ NN S+++ QGN      +S NQ  +    +Q  A  + N    + N  P        CQIC K G
Subjt:  NLSSMVMVAQHNSWRGSNRGMGRNSGDRGRGNFNHNN-SSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYG

Query:  HDALDCYHMLNFSYQGRYPPAKLVAIAA
        H ALDCYH ++F+YQGR+PPA+L A+A+
Subjt:  HDALDCYHMLNFSYQGRYPPAKLVAIAA

A0A2N9ISQ3 Retrotran_gag_3 domain-containing protein3.7e-1244.09Show/hide
Query:  NLSSMVMVAQHNSWRGSNRGMGRNSGDRGRGNFNHNNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYGH
        N SS     Q+NS   +NRG GRN   RG      N    YN G++N       N GS   FSS+N  P+ P+       P P  N +   CQIC K GH
Subjt:  NLSSMVMVAQHNSWRGSNRGMGRNSGDRGRGNFNHNNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKKYGH

Query:  DALDCYHMLNFSYQGRYPPAKLVAIAA
         ALDCY  +N++YQGR PPAKL AIA+
Subjt:  DALDCYHMLNFSYQGRYPPAKLVAIAA

A0A2N9J2G3 Reverse transcriptase Ty1/copia-type domain-containing protein1.4e-1143.92Show/hide
Query:  KTGQESMNLSSMVMVAQ----------HNSWRG--SNRGMGRNSGDRGRGNFNHNNS--SSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNP
        K+ QE+   +S++ +A           +NS RG  +NRG G  +G RGRGN   N S    YNQG+      Y+ + G  P   SQ+    NPN +  NP
Subjt:  KTGQESMNLSSMVMVAQ----------HNSWRG--SNRGMGRNSGDRGRGNFNHNNS--SSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNP

Query:  NPDPNQNLNFFPCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA
        N   N N N   CQIC K GH ALDCY+ +NFSYQGR+ PAKL AIA+
Subjt:  NPDPNQNLNFFPCQICKKYGHDALDCYHMLNFSYQGRYPPAKLVAIAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGGAAATAGAAAAACAGGACAAGAATCAATGAATTTGTCCTCAATGGTAATGGTTGCTCAACATAACTCTTGGAGAGGTTCAAATAGAGGAATGGGTAGAAA
TTCGGGTGATCGTGGCAGAGGAAACTTTAACCACAACAATTCCTCCTCCTACAATCAGGGTAATTTCAACAAAATCAATCCATATTCTTACAATCAAGGTAGCACTCCAA
CCTTTTCTTCTCAGAACCTTGCTCCTGTTAATCCAAACCTTGCATTTGTGAACCCAAATCCTGATCCTAACCAAAATCTGAATTTCTTTCCCTGTCAAATTTGTAAGAAG
TATGGACATGATGCCTTAGATTGTTATCATATGCTGAATTTTTCTTATCAAGGAAGGTACCCACCTGCAAAATTAGTTGCTATAGCTGCTAATTAA
mRNA sequenceShow/hide mRNA sequence
CAAAAACCACTCTTCCATATCACATCTTGCAAAGGCTCTCCCTACTCAAACCCTTTGTTGGGAACCTCTCTGCTAGACAGAAAATTCGGCCGTGCCACCTGGAATCTGCG
ACTGCGTGAGCAAAGCTAAACCGCCAACTCTTGACTCATACCGCGAAACCCACCTACGCACTTTCAGTTCGATTTTTCTTAAGCGCGTACCGAGAGGGTATTTATTTTTT
TCTAAACTATTATATTTCTTCAAACACAATTCCCTTTGGCACCACAAATTTATGAATTTGTTTTAAACCTCTTTTTTTGTTATTGGGTGATAGAGTTATTCACTATTTTT
GCCCGACGTGGAGACTTTTAGCCGAATCGCAAAGGCTCATTTCTGTGTTCTGATCTATACCTAAGTTGGCATACTAGGTAATGGTGCATACCGTGGTGGCTGATTGAGGA
GGGTTGATGAGATCATGGGGACCGTCCTGAGTCATTTATTTTCCGCATTAAACTTAGATCATTTTTATTTTAACATTTTTAGTACTTCATTATAAACCCTATCTTCTTTA
TTTTCAAGGGGGTCCCTGACAACTATTTAAATTTATTAAATGCATATTTAATATTTTCTCCATAAATATTCGGTTAAAGTCTTCATTACTTTGAATTTTAGTATTAAATG
CATGCATGGTAATTATTCTAGTTTCTAATTGGGAAATTAGGGTCGATACAATCACAATTGAGGAACTTCACACTCTCCTTAAAAATGAAAGTTGGAAATAGAAAAACAGG
ACAAGAATCAATGAATTTGTCCTCAATGGTAATGGTTGCTCAACATAACTCTTGGAGAGGTTCAAATAGAGGAATGGGTAGAAATTCGGGTGATCGTGGCAGAGGAAACT
TTAACCACAACAATTCCTCCTCCTACAATCAGGGTAATTTCAACAAAATCAATCCATATTCTTACAATCAAGGTAGCACTCCAACCTTTTCTTCTCAGAACCTTGCTCCT
GTTAATCCAAACCTTGCATTTGTGAACCCAAATCCTGATCCTAACCAAAATCTGAATTTCTTTCCCTGTCAAATTTGTAAGAAGTATGGACATGATGCCTTAGATTGTTA
TCATATGCTGAATTTTTCTTATCAAGGAAGGTACCCACCTGCAAAATTAGTTGCTATAGCTGCTAATTAAGTAAAAAAATTCTCAAATACAATCCCTATGCAATATATGA
ATCAAGACTCAAATATCTGGCTCACTGATAGTAGATGTAATGTTCACATGACTAATGACCTCAATATTGTGAATCACTCTGCGATTTTTCCTTCTAATGACTCAATTCTT
GCTGGAAATGGACAACAATTAAGCATATCTCATCAAGGATAAGGTAACATGTATACCTCCAACATTCCTTTATTCTGGATAAACTGTTTTGTGTTCCTAATATTGTTGCT
A
Protein sequenceShow/hide protein sequence
MKVGNRKTGQESMNLSSMVMVAQHNSWRGSNRGMGRNSGDRGRGNFNHNNSSSYNQGNFNKINPYSYNQGSTPTFSSQNLAPVNPNLAFVNPNPDPNQNLNFFPCQICKK
YGHDALDCYHMLNFSYQGRYPPAKLVAIAAN