CuGenDBv2

Gene ID	Sed0014376
Organism	Sechium edule (Chayote v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	LG11:8440818..8444565
RNA-Seq Expression	Sed0014376
Synteny	Sed0014376
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.3e-17

37.84

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + + NW S  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.8e-17

38.05

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        SLY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W S  P+D  SL    +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWENFV
         K +K ++  N +
Subjt:  FKKRKKVVWENFV

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.2e-16

36.04

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W +  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.8e-17

38.05

Show/hide

Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        SLY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W S  P+D  SL    +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWENFV
         K +K ++  N +
Subjt:  FKKRKKVVWENFV

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.2e-16

36.04

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W +  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

6.4e-18

37.84

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + + NW S  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.9e-17

38.05

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        SLY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W S  P+D  SL    +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWENFV
         K +K ++  N +
Subjt:  FKKRKKVVWENFV

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

1.9e-17

38.05

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        SLY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W S  P+D  SL    +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWENFV
         K +K ++  N +
Subjt:  FKKRKKVVWENFV

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

2.0e-16

36.04

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Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W +  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

2.0e-16

36.04

Show/hide

Query:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
        +LY  +WK   PKK KFF+W  +HG INT D+LQKR+P   +SP WC +C   +E   H+F  C ++ + W   + +  W +  P+D  SL+   +C   
Subjt:  SLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP

Query:  FKKRKKVVWEN
         + +K ++  N
Subjt:  FKKRKKVVWEN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

1.8e-04

28.57

Show/hide

Query:  SSSLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDL------------------IRMVFNW
        S  L + IW      K+K FLW ++  A+ T ++L  R   M+I P  C  C    E+  H    C FA   W L                  I  + N+
Subjt:  SSSLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDL------------------IRMVFNW

Query:  -PSVIPSDFVSLLNGALCGHPFKKRKKVVWENF
              SDF  LL   L    +K R  VV+  F
Subjt:  -PSVIPSDFVSLLNGALCGHPFKKRKKVVWENF

Sequences

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CDS sequence

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ATGAACAAGAATGTTCACCTTTGTAGCTCCTCACTCTACAGTGTGATTTGGAAAGACAGTTCCCCCAAAAAGATCAAGTTTTTCCTATGGGATAGTGTTCATGGGGCTAT
AAATACACATGACAAGCTTCAAAAGAGGATGCCATGCATGAAGATCTCCCCTCGTTGGTGTGTCATTTGTAGAAACCATGAAGAAACACAGCCCCATATGTTTAACTTCT
GCACATTTGCTATCAAATTCTGGGATCTCATTAGAATGGTGTTCAATTGGCCCTCTGTTATACCAAGTGATTTTGTAAGTCTGCTCAACGGTGCTCTGTGTGGGCACCCT
TTCAAGAAGAGAAAGAAAGTGGTGTGGGAGAACTTTGTGCGTGCATTTTCAGGAATCTATGGATGGAGAGAAATAGATGCATCTTTCAGGATAAGAACACTGCCTTTTCT
AATTTCTTTGATAATATTGTTATAA

mRNA sequence

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GAAAAATGAGAAGAGGGCATTTTTGGAATTGGGCATTTCAACAGAGAGGAAAAGAAAAGGCAACCCTTTTTCACGCACCAAAGAACCCCCTTCTCATTTTCCGCCGCCGC
CGTTTGTCTCAGTCCGCCGCAGCCGCCAGCTTGTGAGTCGCACTTCGTCGGCCTAATCGCTGCCTAGAAGGGGCAGCTGCGCCGCCGATCAACGGAGTGCCGCCGGTCGC
CATTTCTCCGCTGTACAGATGCCGATCATCTCCAAGGTGTGGATTCCGATTTGAGGTCCAAGGTGAGTGGGATTTTGGGGCTGTTTCTTGAAGGAACTTTGGGTTTTATT
ACAAAGAACATTAAAGTTGAAGATCAAAGAAGTAGATTCTATTCAAATCTTGAAGGTTTCTCCAAATCCAAATCAAGTTGATTCAAAATCTGCCCGCTCCATTCGATTGC
TAATTGATTTTGGAAGCCACTTAATTGCACCATACATAATGGATTCTGAGTTACACACTGTTCAGATTACCCCTGCTTCAACCTCTTCAGTTGAGATTACACCCGCTGTT
ACCGAACATCCTAGTCTAACATCCATCAAAGGAAAAATGACCTATGTCTCGTCCAATTCTTCTTCGGAGGTTTGTATTTATCAAATTCCTGAAATTATCCGCGGACTCAA
CCCCGATTCTTACTCTCCTACTTTTGTTTCTATTGGCCCTTTCCATGCCCATAGAAACAATCTACTCTTCAATTCACTAAAGCTTGAATATCTTCAAGAATTCGTCAATA
GCTTCAAAGTAACCATTGAACAGGTATTTTAAACGATATTACCTTTGGAAGATAGAGCACGGAAGTTCTATGCAGACCCTATCGCCCTTAGTTCTATCGAATTCATTGAA
CTTCTTGTCTTTGATGCCTGTTTTATCATCAACTACATTTTCAAGGTTCGAGAGACCTCACTTGCACCTCAGCCTAATAGTTTTTGGAAGACATTCAAGCAATTCAGGGA
AAACGTAACTTCTGATCTTCTCTTGCTCGAAAACCAACTTCCATTCTTCATTCTCAATTCCTTATACGCACTCATTTCTAAAAATCTAAATGAAGAGTCTTTGGCTTCTT
ATATCCATGAGTTTCTCCTTCAACGTCAGCCAGATTTTTCAATAAATACAATTCCTTCAAAATTTTCGCACATAGGAAATCATCTTCTGGATTTCCGAAGGCTACAGTTG
TGCCATGGAAAACTTTCAGACGTGATCACCGATGTTTCCTCATGTTTCCCATATACTGCCACTAAGCTTCGCAAGTGTGGAGTTTCTTTTCAGGTAAACGAAGCTCGATT
AGTTTCTTTTCAGGTAAACGAAGCTCGATTTGTTTTGGACATTTCTTTCGAAGAGTCCAGTGGTTGTCTCAAATTGCCACAATTGACTATTTACAAGGGCTTTGAGAGAC
ACATGCTGAATCTTATTGGCTACGAGCAATGCCATCGACGTGATCATCAAAATGAGGTAGGTGATTTTGCTGTATTCATGCAAAATCTGGTGAAGACAGATGAAGATATC
GAGTTGTTGATCAAGCATGATATCATTAAAAATAATCTGAGTACGATAAGTGAAGCAACCAAAGTCTTTAACAAAATTGGCAATCTCGTTTTGGTCGACAATGAGAACGT
CTCCTACGCCGTGGAGTGTAAGAAGATGATGAAATTTTGCCAGCAACGGCGCCATCGGTGGTTCACCTCTTTGAAGGACAATTATTTTAACTCCTTGGGTTGGTACTGCC
ACTATCGGTGCCATCATCATCATTTGTCTCACGGTCGTGCAAGCGGTAACATCAGTAATCTCTGTAACGAAGTAGGATGACGTGAAGATGGAAAAAAATGAATGGAGGGA
CATTATAGAATCTCTCATGGGGTCAAAGATGGTGCTAATACCAGTTTTTGGAAGGATGGATGGCTCAAAGATGAGGTTCTGTGCAACAAGTTTCCTCTTTTGTTTGATCC
CACAACCAGAAAAAGAGATTTTATACAGCAGATTTGGGATCCTTCACAAAACTGTTAGGAATTTGGGGCTGAGGAGAAACCTCAAGGATGAGGAGATTGATGAATTAGGA
GAACTTACCTTGATGCTTACTGATTTTGCCCCCCTTCTATTGGTAAAGATGAGCTAAAGTGGTATCCTGACCCTAAAACATCATTCTCTGTGAAATCTCTACTGGAAGAT
ATGAACAAGAATGTTCACCTTTGTAGCTCCTCACTCTACAGTGTGATTTGGAAAGACAGTTCCCCCAAAAAGATCAAGTTTTTCCTATGGGATAGTGTTCATGGGGCTAT
AAATACACATGACAAGCTTCAAAAGAGGATGCCATGCATGAAGATCTCCCCTCGTTGGTGTGTCATTTGTAGAAACCATGAAGAAACACAGCCCCATATGTTTAACTTCT
GCACATTTGCTATCAAATTCTGGGATCTCATTAGAATGGTGTTCAATTGGCCCTCTGTTATACCAAGTGATTTTGTAAGTCTGCTCAACGGTGCTCTGTGTGGGCACCCT
TTCAAGAAGAGAAAGAAAGTGGTGTGGGAGAACTTTGTGCGTGCATTTTCAGGAATCTATGGATGGAGAGAAATAGATGCATCTTTCAGGATAAGAACACTGCCTTTTCT
AATTTCTTTGATAATATTGTTATAATGGTGGTTAATTGGTGTAAACAACTATCCACAATCCACCATTACAGCTTTGAGGCTCTCCTATCTAATTGGATAGGCCTTTCGTA
ATCTCTCCCATTGGGTTTCTCCTTCTTTTGTAATTTCATATTATGAATGAAATTGTTTCTTATCCAAAAAAGTAGTTAAAATTTGTTATGAATAGGTCGTCTCTAAATAC
TATTGTAAGCTTTGTTTATCTGTGAGTTTTGCTTGTGCAGGCACCTCATGAATGACAGTGTTTAGGCACCATGGTGGGAACTCGGGCTGGGGGAGTTTAAAACTCTAGCT
TTTAATATGATGTGTTAGGATTTTGTGTGAACTTTGATTTGAGCTAGTATACTTTATGTAAACACTTTTGTAACCTTGGAATAGTTAAGAGTTTTGGATGTAAATATTAA
TGATCAACTGCTCTTGAGCAA

Protein sequence

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MNKNVHLCSSSLYSVIWKDSSPKKIKFFLWDSVHGAINTHDKLQKRMPCMKISPRWCVICRNHEETQPHMFNFCTFAIKFWDLIRMVFNWPSVIPSDFVSLLNGALCGHP
FKKRKKVVWENFVRAFSGIYGWREIDASFRIRTLPFLISLIILL

Sed0014376 (gene) of Chayote v1 genome