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Sed0014404 (gene) of Chayote v1 genome

Gene IDSed0014404
OrganismSechium edule (Chayote v1)
DescriptionSAGA-associated factor 11
Genome locationLG13:20088459..20091265
RNA-Seq ExpressionSed0014404
SyntenySed0014404
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0035616 - histone H2B conserved C-terminal lysine deubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031969 - chloroplast membrane (cellular component)
GO:0070461 - SAGA-type complex (cellular component)
GO:0071819 - DUBm complex (cellular component)
GO:0016301 - kinase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013246 - SAGA complex, Sgf11 subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037006.1 Ataxin-7-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-5371.51Show/hide
Query:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG
        E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAG
Subjt:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG

Query:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        RFAPHLEKCMGRGRKARLKVTRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

XP_004153719.1 SAGA-associated factor 11 [Cucumis sativus]1.0e-5473.62Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC
        S+N FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQAR R+                IF        ++  DCMNC RSI+AGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKAR KVTRSSTAAQ+RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

XP_008457340.1 PREDICTED: ataxin-7-like protein 3 [Cucumis melo]8.0e-5574.23Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC
        S+N FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+                IF        ++  DCMNC RSI+AGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKAR KVTRSSTAAQ+RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

XP_022949027.1 SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata]1.2e-5371.51Show/hide
Query:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG
        E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAG
Subjt:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG

Query:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        RFAPHLEKCMGRGRKARLKVTRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

XP_022949028.1 SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata]2.6e-5373.01Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAGRFAPHLEKC
        S+NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKARLKVTRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

TrEMBL top hitse value%identityAlignment
A0A0A0LYA8 SAGA-associated factor 115.0e-5573.62Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC
        S+N FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQAR R+                IF        ++  DCMNC RSI+AGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKAR KVTRSSTAAQ+RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

A0A1S3C599 SAGA-associated factor 113.9e-5574.23Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC
        S+N FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+                IF        ++  DCMNC RSI+AGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKAR KVTRSSTAAQ+RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

A0A6J1GAV8 SAGA-associated factor 115.6e-5471.51Show/hide
Query:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG
        E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAG
Subjt:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG

Query:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        RFAPHLEKCMGRGRKARLKVTRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

A0A6J1GAY0 SAGA-associated factor 111.2e-5373.01Show/hide
Query:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAGRFAPHLEKC
        S+NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAGRFAPHLEKC
Subjt:  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAGRFAPHLEKC

Query:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        MGRGRKARLKVTRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  MGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

A0A6J1KF62 SAGA-associated factor 112.8e-5370.35Show/hide
Query:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG
        E N++  L+S NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S                        DCMNC RSIVAG
Subjt:  EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS-----------------------IDCMNCDRSIVAG

Query:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP
        RFAPHLEKCMGRGRKARLKVTRSSTA Q+RYS+GS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Subjt:  RFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

SwissProt top hitse value%identityAlignment
B1PM81 SAGA-associated factor 11 homolog5.8e-0834.11Show/hide
Query:  DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLG----LDR-NLEEEEEELRLSAQARARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCM
        +I     N   ++N  +  LLD  +V V  E H + + G    +D  N +E E   R+       +  +    K +DC   NCDR + A RFAPHLEKCM
Subjt:  DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLG----LDR-NLEEEEEELRLSAQARARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCM

Query:  GRGR-KARLKVTRSSTAAQNRYSRGSPIS
        G GR  +R+   R +T   N  S  S  S
Subjt:  GRGR-KARLKVTRSSTAAQNRYSRGSPIS

B3NHQ1 SAGA-associated factor 11 homolog1.7e-0730.71Show/hide
Query:  DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLE--EEEEELRLSAQARARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCMGRG
        ++ +   N   +SN  F  LLD  +V + +E H + + G    L+   E+   R+       +  +    K +DC   NCDR + A RFAPHLEKCMG G
Subjt:  DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLE--EEEEELRLSAQARARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCMGRG

Query:  R-----KARLKVTRSSTAAQNRYSRGS
        R      +R   T+    + + +S G+
Subjt:  R-----KARLKVTRSSTAAQNRYSRGS

B4KY72 SAGA-associated factor 11 homolog1.7e-0733.61Show/hide
Query:  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD--------KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVT
        ++N  F  LLD V+  +  E H + + G    L+   EE   SA     +  LD        K +DC   +CDR + A RFAPHLEKCMG GR +    +
Subjt:  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD--------KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVT

Query:  RSSTAAQNRYSRGSPISVY
        R     +   +  S  S Y
Subjt:  RSSTAAQNRYSRGSPISVY

B4LDA6 SAGA-associated factor 11 homolog1.7e-0733.61Show/hide
Query:  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD--------KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVT
        ++N  F  LLD V+  +  E H + + G    L+   EE   SA     +  LD        K +DC   NCDR + A RFAPHLEKCMG GR +    +
Subjt:  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD--------KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVT

Query:  RSSTAAQNRYSRGSPISVY
        R     +   +  +  S Y
Subjt:  RSSTAAQNRYSRGSPISVY

Q94BV2 SAGA-associated factor 112.4e-3854.34Show/hide
Query:  AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIV
        AE N S+    S+  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +ARA++                IF         +  +CMNC R IV
Subjt:  AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIV

Query:  AGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD
        AGRFAPHLEKCMG+GRKAR K TRS+TAAQNR +R SP   YSPYPNS S N+L +G+  + GE+ SN T ++
Subjt:  AGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD

Arabidopsis top hitse value%identityAlignment
AT5G58575.1 CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.7e-3954.34Show/hide
Query:  AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIV
        AE N S+    S+  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +ARA++                IF         +  +CMNC R IV
Subjt:  AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------------IF-------LDKSIDCMNCDRSIV

Query:  AGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD
        AGRFAPHLEKCMG+GRKAR K TRS+TAAQNR +R SP   YSPYPNS S N+L +G+  + GE+ SN T ++
Subjt:  AGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACTCTGGATATAGCGGAGCAAAACTCTAATTTCCTGCTTTCATCTAATAATTTCTTTGGAGATCTCCTGGATTCTGTGATTGTTGATGTTGCATCGGAATGTCA
TCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTGAGACTTTCAGCACAGGCACGAGCAAGATTGATATTTTTGGACAAAAGCATCGATT
GTATGAATTGTGACCGATCAATTGTGGCTGGGAGATTTGCCCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCT
GCACAGAACCGGTATTCACGAGGCAGTCCTATTTCTGTATATTCCCCTTATCCTAATTCCACCAGCATGAATCGCTTGCCTAATGGAACGTCTAGTCTTCCAGGCGAGGA
GTACTCAAACGGTACATCCAAAGACCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTACTCTGGATATAGCGGAGCAAAACTCTAATTTCCTGCTTTCATCTAATAATTTCTTTGGAGATCTCCTGGATTCTGTGATTGTTGATGTTGCATCGGAATGTCA
TCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTGAGACTTTCAGCACAGGCACGAGCAAGATTGATATTTTTGGACAAAAGCATCGATT
GTATGAATTGTGACCGATCAATTGTGGCTGGGAGATTTGCCCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCT
GCACAGAACCGGTATTCACGAGGCAGTCCTATTTCTGTATATTCCCCTTATCCTAATTCCACCAGCATGAATCGCTTGCCTAATGGAACGTCTAGTCTTCCAGGCGAGGA
GTACTCAAACGGTACATCCAAAGACCCATGA
Protein sequenceShow/hide protein sequence
MVTLDIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
AQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP