CuGenDBv2

Gene ID	Sed0014435
Organism	Sechium edule (Chayote v1)
Description	protein SINE3
Genome location	LG04:41873762..41874940
RNA-Seq Expression	Sed0014435
Synteny	Sed0014435
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594019.1 hypothetical protein SDJN03_13495, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-76

73.39

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PISK E+FSPISV+SN+ QIPD+D+SFLQ +NP LS S +S LF +LS SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F GSN+LDEASAGS+EAEI VN+LRRAL+QVLQSTDVDHQSKKLIDAS+ II+D+FLAIP ERD I +L+S+KS VLSLGL LW IVL  
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

XP_022930352.1 uncharacterized protein LOC111436822 [Cucurbita moschata]

5.1e-76

73.39

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PI K E+FSPISV+SN+ QIPD+D+SFLQ +NP LS S +S LF +LS SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F GSN+LDEASAGS+EAEI VN+LRRAL+QVLQSTDVDHQSKKLIDAS+ II+D+FLAIP ERD I +L+S+KS VLSLGL LW IVL L
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

XP_022999957.1 uncharacterized protein LOC111494286 [Cucurbita maxima]

2.6e-75

73.39

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PI K E+FSPISV+SN+ QIPD+D+SFLQ +NP LS S +S LF +LS SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F  SN+LDEASAGS+EAEI VN+LRRAL QVLQSTDVDHQSKKLIDAS+ II+DDFLAIP ERD I +L+S+KS VLSLGL LW IVL L
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

XP_023514806.1 uncharacterized protein LOC111779010 [Cucurbita pepo subsp. pepo]

3.3e-75

72.94

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PI K E+FSPISV+ N++QIPD+DTSFLQ +NP LS S +S LF +L  SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F GSN+LDEASAGS+EAEI VN+LRRAL QVLQSTDVDHQSKKLIDAS+ II+D+FLAIP ERD I +L+S+KS VLSLGL LW IVL L
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

XP_038876305.1 uncharacterized protein LOC120068561 [Benincasa hispida]

2.7e-77

72.48

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEK+MK++QTPQRD  ANRRSRKP KIAK LTATFSSLS D I+PISK E+FSPISV+++++QIPD+D++FLQG+NP  S S ++ LF DLS SSVV+F+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        N+ LDKVPV+FSGSND+DEASAGS+E +I VN LRRAL QVLQSTDVDHQSKKLIDASM+II+DDFLAIP ERD+IAQL+S K+ VLSL + LW IVLA+
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G K  FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E1Y8 uncharacterized protein LOC103497781

1.1e-71

70.18

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKRMK+ QTPQR+   NRRSRKP KIAK LTA+FSSLS D I  ISK E  SPISV+S+++QI D+D+SFLQG+NP+ S   D+ LF DLS SSVV+F+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        N+ LDKV VDFSGSND++EASAGS+EAEI VN LRRAL QVL STDVDHQSKKLIDASM II+DDFLAIP ERDRIAQL+S K+ VLS+ + LW +VLA+
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G K  F GPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

A0A5D3BTA3 Uncharacterized protein

1.1e-71

70.18

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKRMK+ QTPQR+   NRRSRKP KIAK LTA+FSSLS D I  ISK E  SPISV+S+++QI D+D+SFLQG+NP+ S   D+ LF DLS SSVV+F+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        N+ LDKV VDFSGSND++EASAGS+EAEI VN LRRAL QVL STDVDHQSKKLIDASM II+DDFLAIP ERDRIAQL+S K+ VLS+ + LW +VLA+
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G K  F GPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

A0A6J1CAA2 uncharacterized protein LOC111009828

2.0e-73

70.64

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKRMKE+QTPQRDPAANRRSRKP KIAKSL ATFSSLS D ++PIS  E+FSPI  +S+++Q+PD+D SFLQ +NP LS S +S  F DLS SSVVT E
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        N+  DK+PV+F+GSNDL + SA S+EAEI V+FLRRAL+QVLQSTDVDHQSKKL+DASM II++DF+AIP E+D IAQL+SAKSLVLSL   LW I+LAL
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFFFG G K  F GP PT
Subjt:  AFFFGYGDKDKFIGPLPT

A0A6J1EQ83 uncharacterized protein LOC111436822

2.5e-76

73.39

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PI K E+FSPISV+SN+ QIPD+D+SFLQ +NP LS S +S LF +LS SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F GSN+LDEASAGS+EAEI VN+LRRAL+QVLQSTDVDHQSKKLIDAS+ II+D+FLAIP ERD I +L+S+KS VLSLGL LW IVL L
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

A0A6J1KL67 uncharacterized protein LOC111494286

1.2e-75

73.39

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Query:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE
        MEKR KE+QTP RD AANRRS+KPLKI KSLTATFSS   D I+PI K E+FSPISV+SN+ QIPD+D+SFLQ +NP LS S +S LF +LS SSVVTF+
Subjt:  MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFE

Query:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL
        NK LDKVPV+F  SN+LDEASAGS+EAEI VN+LRRAL QVLQSTDVDHQSKKLIDAS+ II+DDFLAIP ERD I +L+S+KS VLSLGL LW IVL L
Subjt:  NKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLAL

Query:  AFFFGYGDKDKFIGPLPT
        AFF G G ++ FIGPLPT
Subjt:  AFFFGYGDKDKFIGPLPT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G06600.1 unknown protein

1.9e-04

26.67

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Query:  MKEFQTPQRDPA------ANRRSRKPLKIAKSLT-----ATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSA
        MKE Q P++  A      A R     +K  K  T     ATFS +S           +FSPIS IS      + + S +QG + DL  + +  L  D S 
Subjt:  MKEFQTPQRDPA------ANRRSRKPLKIAKSLT-----ATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSA

Query:  SSVVTFENKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLL
         S +T     +D    D   S     AS  S+  EI  N L++ +  V  S +++                           + ++V+ K  ++ L  +L
Subjt:  SSVVTFENKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLL

Query:  WFIVLALAFFFGYGDKDKFIGPLPT
        W I+ A+  FF  G++  + GPLPT
Subjt:  WFIVLALAFFFGYGDKDKFIGPLPT

AT3G06600.2 unknown protein

1.9e-04

26.67

Show/hide

Query:  MKEFQTPQRDPA------ANRRSRKPLKIAKSLT-----ATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSA
        MKE Q P++  A      A R     +K  K  T     ATFS +S           +FSPIS IS      + + S +QG + DL  + +  L  D S 
Subjt:  MKEFQTPQRDPA------ANRRSRKPLKIAKSLT-----ATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSA

Query:  SSVVTFENKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLL
         S +T     +D    D   S     AS  S+  EI  N L++ +  V  S +++                           + ++V+ K  ++ L  +L
Subjt:  SSVVTFENKHLDKVPVDFSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLL

Query:  WFIVLALAFFFGYGDKDKFIGPLPT
        W I+ A+  FF  G++  + GPLPT
Subjt:  WFIVLALAFFFGYGDKDKFIGPLPT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGAAAAGGATGAAAGAGTTTCAAACACCGCAGAGAGATCCAGCGGCGAATCGGAGATCAAGAAAACCTCTGAAGATCGCCAAGAGCTTGACCGCCACATTTTCATC
ACTTTCCGGCGATATCATCCGGCCGATTTCGAAGCAGGAAGAGTTCTCTCCGATTTCCGTTATCTCAAACCTCGATCAAATTCCAGATCTCGACACTAGTTTCTTGCAAG
GTCTGAATCCGGATCTTTCTCCTTCATCCGATAGCTTGCTTTTCACAGATCTATCGGCTTCTTCCGTTGTAACTTTTGAAAATAAACATCTCGACAAGGTTCCAGTCGAT
TTTTCTGGATCTAATGATTTAGATGAAGCAAGCGCAGGATCAATTGAGGCAGAGATTACGGTGAATTTCCTAAGGCGTGCTTTAGCTCAAGTCCTGCAATCGACGGACGT
TGATCATCAGTCTAAGAAGCTCATAGATGCATCCATGACGATCATCATGGACGATTTCCTTGCTATACCTCATGAGCGAGACCGAATCGCTCAACTCGTATCTGCCAAAA
GCCTTGTTCTGTCTCTAGGTTTGTTACTGTGGTTCATCGTCTTGGCTTTAGCTTTCTTTTTTGGTTATGGAGACAAGGATAAGTTCATTGGTCCACTGCCAACTTAG

mRNA sequence

Show/hide mRNA sequence

GCGGCACCATCTCCAATGGCGCCAAAGATTTAACTTCAGAACTTCCAAAACTTTTTCCCGCGACAAGAAGATGGAGAAAAGGATGAAAGAGTTTCAAACACCGCAGAGAG
ATCCAGCGGCGAATCGGAGATCAAGAAAACCTCTGAAGATCGCCAAGAGCTTGACCGCCACATTTTCATCACTTTCCGGCGATATCATCCGGCCGATTTCGAAGCAGGAA
GAGTTCTCTCCGATTTCCGTTATCTCAAACCTCGATCAAATTCCAGATCTCGACACTAGTTTCTTGCAAGGTCTGAATCCGGATCTTTCTCCTTCATCCGATAGCTTGCT
TTTCACAGATCTATCGGCTTCTTCCGTTGTAACTTTTGAAAATAAACATCTCGACAAGGTTCCAGTCGATTTTTCTGGATCTAATGATTTAGATGAAGCAAGCGCAGGAT
CAATTGAGGCAGAGATTACGGTGAATTTCCTAAGGCGTGCTTTAGCTCAAGTCCTGCAATCGACGGACGTTGATCATCAGTCTAAGAAGCTCATAGATGCATCCATGACG
ATCATCATGGACGATTTCCTTGCTATACCTCATGAGCGAGACCGAATCGCTCAACTCGTATCTGCCAAAAGCCTTGTTCTGTCTCTAGGTTTGTTACTGTGGTTCATCGT
CTTGGCTTTAGCTTTCTTTTTTGGTTATGGAGACAAGGATAAGTTCATTGGTCCACTGCCAACTTAGACTTGTGATGAAATTCCTTGTTCTAGAATCAGGTATATATGCA
CTCTTTTACTTTGATACCTTTGAATTAAGACTGTTTCATTGTGTTTCTTGAGAAACCTGCTGAATCTTGATATTTTGTTGTCGAAAGTTAACAGTACATTAACC

Protein sequence

Show/hide protein sequence

MEKRMKEFQTPQRDPAANRRSRKPLKIAKSLTATFSSLSGDIIRPISKQEEFSPISVISNLDQIPDLDTSFLQGLNPDLSPSSDSLLFTDLSASSVVTFENKHLDKVPVD
FSGSNDLDEASAGSIEAEITVNFLRRALAQVLQSTDVDHQSKKLIDASMTIIMDDFLAIPHERDRIAQLVSAKSLVLSLGLLLWFIVLALAFFFGYGDKDKFIGPLPT

Sed0014435 (gene) of Chayote v1 genome