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Sed0014439 (gene) of Chayote v1 genome

Gene IDSed0014439
OrganismSechium edule (Chayote v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG04:21161621..21179206
RNA-Seq ExpressionSed0014439
SyntenySed0014439
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035598.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.3e-2271.62Show/hide
Query:  PRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT
        PRGDG FQ LE++NNNAYKIDLPG++ VSS FN A LSPFDVGD+F D R NPF+EGE+D++HGVP V  GPIT
Subjt:  PRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]1.2e-2983.95Show/hide
Query:  KDQTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT
        K +TKLHPRG G +QVLERINNNAYKIDLPGDF VSSTFNVADLSPFDVGDD  DSRTN  EEGEDDK+HGVP VS GPIT
Subjt:  KDQTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT

XP_035544624.1 uncharacterized protein LOC118348007, partial [Juglans regia]4.0e-2063.53Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QV  GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

XP_035548680.1 uncharacterized protein LOC118349195, partial [Juglans regia]4.0e-2063.53Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QV  GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

XP_035551062.1 uncharacterized protein LOC118349658, partial [Juglans regia]4.0e-2063.53Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QV  GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

TrEMBL top hitse value%identityAlignment
A0A2N9EHK0 Uncharacterized protein5.1e-2164.71Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QVS GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

A0A2N9EK74 CCHC-type domain-containing protein5.1e-2164.71Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QVS GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

A0A5D3E571 Transposon Ty3-I Gag-Pol polyprotein3.5e-2271.62Show/hide
Query:  PRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT
        PRGDG FQ LE++NNNAYKIDLPG++ VSS FN A LSPFDVGD+F D R NPF+EGE+D++HGVP V  GPIT
Subjt:  PRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252686.0e-3083.95Show/hide
Query:  KDQTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT
        K +TKLHPRG G +QVLERINNNAYKIDLPGDF VSSTFNVADLSPFDVGDD  DSRTN  EEGEDDK+HGVP VS GPIT
Subjt:  KDQTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT

A0A6P9DVI5 uncharacterized protein LOC1183440141.9e-2063.53Show/hide
Query:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT
        +TKLHPRGDG FQ+LE+IN+NAYK+DLPG++ VS+TFNV+DLSPFDVG+   DSR+NPFEE  +D++ G P      QV  GPIT
Subjt:  QTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVP------QVSFGPIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTGGGTTTGGGTGCATTTTCAAAAGGAGCGATTTCCATCTCAAAGAAAGACCAAACCAAGTTACATCCAAGAGGAGATGGTCATTTTCAAGTTCTTGAGAGGAT
TAACAACAATGCCTACAAAATCGATCTTCCAGGTGACTTTTTAGTGAGTTCTACTTTTAATGTTGCTGACTTGAGTCCTTTTGATGTAGGTGATGATTTTCCAGATTCGA
GGACGAATCCTTTTGAAGAGGGGGAAGATGATAAGGATCATGGAGTTCCACAAGTTTCATTTGGACCTATTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTGGGTTTGGGTGCATTTTCAAAAGGAGCGATTTCCATCTCAAAGAAAGACCAAACCAAGTTACATCCAAGAGGAGATGGTCATTTTCAAGTTCTTGAGAGGAT
TAACAACAATGCCTACAAAATCGATCTTCCAGGTGACTTTTTAGTGAGTTCTACTTTTAATGTTGCTGACTTGAGTCCTTTTGATGTAGGTGATGATTTTCCAGATTCGA
GGACGAATCCTTTTGAAGAGGGGGAAGATGATAAGGATCATGGAGTTCCACAAGTTTCATTTGGACCTATTACATGA
Protein sequenceShow/hide protein sequence
MRLGLGAFSKGAISISKKDQTKLHPRGDGHFQVLERINNNAYKIDLPGDFLVSSTFNVADLSPFDVGDDFPDSRTNPFEEGEDDKDHGVPQVSFGPIT