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Sed0014459 (gene) of Chayote v1 genome

Gene IDSed0014459
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing protein
Genome locationLG11:25579778..25580347
RNA-Seq ExpressionSed0014459
SyntenySed0014459
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598443.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.7e-1937.16Show/hide
Query:  SSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNKNGLK
        ++ KRKN   D  P + +R+E++FS+T+EMP  LR+RI  M G D+++V QKQLQ++D +K+ GRLLIP KK+ + FAT  E E +  +E   + + G++
Subjt:  SSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNKNGLK

Query:  VLIID--------------------------------PNDFDAG------AVTSN----------LCFALVKLDISEGIFKFL
        V IID                                 N  ++G      +  SN          LCFALVKLDISEGIF F+
Subjt:  VLIID--------------------------------PNDFDAG------AVTSN----------LCFALVKLDISEGIFKFL

XP_004152777.2 putative B3 domain-containing protein At2g27410 [Cucumis sativus]2.5e-2339.59Show/hide
Query:  ERSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEG
        +R + +K  NN    +S   P K +RK+V+FS TIEMP +LRDRI E+ G++I+   QK+LQDTD++K+ GRLLIP KK+ + FA+  E   L  H +E 
Subjt:  ERSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEG

Query:  DKNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL
         KNKNG+ VLIIDP                                N  ++G                       + SNLCFA VKLDISEGIFKF+
Subjt:  DKNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL

XP_008445565.1 PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo]9.2e-2642.35Show/hide
Query:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD
        R +S+KRK N     SD  P K +RK+++FS TIEM  +LRDRI+E+ G+DI+ V QK+LQDTD++K+ GRLLIP KK+ + FA+  E + L  H +E  
Subjt:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD

Query:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL
        KNKNG+ VLIIDP                                N  ++G                       V SNLCFALVKLDISEGIFKF+
Subjt:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL

XP_022144152.1 B3 domain-containing protein At2g31420-like [Momordica charantia]1.9e-2340.76Show/hide
Query:  VERSSSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNK
        ++  ++   K N +D    K K+ EV+FS+TIEMP  LRDRI E+ GYDI+IVIQK+LQDTD++++ GRL IP+KK+ + F T  E + L  Q+E   NK
Subjt:  VERSSSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNK

Query:  NGLKVLIIDP-------------------------------------NDF--------DAGAVTSNLCFALVKLDISEGIFKFL
        NG+  LI+DP                                      DF        ++G  T +LCFALVKLDISEGIF+F+
Subjt:  NGLKVLIIDP-------------------------------------NDF--------DAGAVTSNLCFALVKLDISEGIFKFL

XP_022144153.1 uncharacterized protein LOC111013910 [Momordica charantia]1.7e-1950Show/hide
Query:  SKKRKN-------------NASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSH
        S+KRKN             N +     K K  EV+FS+TIEMP LLRDRI E+ GYDI+ VIQK+LQDTD++++ GRL IP+KK+ + FAT  E + L  
Subjt:  SKKRKN-------------NASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSH

Query:  QEEGDKNKNGLKVLIIDP
        Q+E  KNK+G+  LI+DP
Subjt:  QEEGDKNKNGLKVLIIDP

TrEMBL top hitse value%identityAlignment
A0A0A0LL20 Uncharacterized protein9.6e-2952.32Show/hide
Query:  ERSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEG
        +R + +K  NN    +S   P K +RK+V+FS TIEMP +LRDRI E+ G++I+   QK+LQDTD++K+ GRLLIP KK+ + FA+  E   L  H +E 
Subjt:  ERSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEG

Query:  DKNKNGLKVLIIDP---NDFDAG-----AVTSNLCFALVKLDISEGIFKFL
         KNKNG+ VLIIDP   N F  G      + SNLCFA VKLDISEGIFKF+
Subjt:  DKNKNGLKVLIIDP---NDFDAG-----AVTSNLCFALVKLDISEGIFKFL

A0A1S3BCJ5 B3 domain-containing protein At3g25182-like4.5e-2642.35Show/hide
Query:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD
        R +S+KRK N     SD  P K +RK+++FS TIEM  +LRDRI+E+ G+DI+ V QK+LQDTD++K+ GRLLIP KK+ + FA+  E + L  H +E  
Subjt:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD

Query:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL
        KNKNG+ VLIIDP                                N  ++G                       V SNLCFALVKLDISEGIFKF+
Subjt:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL

A0A5A7VHB3 B3 domain-containing protein4.5e-2642.35Show/hide
Query:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD
        R +S+KRK N     SD  P K +RK+++FS TIEM  +LRDRI+E+ G+DI+ V QK+LQDTD++K+ GRLLIP KK+ + FA+  E + L  H +E  
Subjt:  RSSSKKRKNN----ASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFL-SHQEEGD

Query:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL
        KNKNG+ VLIIDP                                N  ++G                       V SNLCFALVKLDISEGIFKF+
Subjt:  KNKNGLKVLIIDP--------------------------------NDFDAG----------------------AVTSNLCFALVKLDISEGIFKFL

A0A6J1CSJ5 uncharacterized protein LOC1110139108.1e-2050Show/hide
Query:  SKKRKN-------------NASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSH
        S+KRKN             N +     K K  EV+FS+TIEMP LLRDRI E+ GYDI+ VIQK+LQDTD++++ GRL IP+KK+ + FAT  E + L  
Subjt:  SKKRKN-------------NASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSH

Query:  QEEGDKNKNGLKVLIIDP
        Q+E  KNK+G+  LI+DP
Subjt:  QEEGDKNKNGLKVLIIDP

A0A6J1CSV9 B3 domain-containing protein At2g31420-like9.3e-2440.76Show/hide
Query:  VERSSSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNK
        ++  ++   K N +D    K K+ EV+FS+TIEMP  LRDRI E+ GYDI+IVIQK+LQDTD++++ GRL IP+KK+ + F T  E + L  Q+E   NK
Subjt:  VERSSSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNK

Query:  NGLKVLIIDP-------------------------------------NDF--------DAGAVTSNLCFALVKLDISEGIFKFL
        NG+  LI+DP                                      DF        ++G  T +LCFALVKLDISEGIF+F+
Subjt:  NGLKVLIIDP-------------------------------------NDF--------DAGAVTSNLCFALVKLDISEGIFKFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G49610.1 Domain of unknown function (DUF313)3.6e-0431.48Show/hide
Query:  KRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYD--IEIVIQKQLQDTDVSKHQGRLLIPMKK-VSHYFATNRENEFLS---HQEEGDKNKN
        KRK   S     K K      +   E P  L D + +M+G +  I+++ +K L  TDV   + RLLIP  K + + F T  E+  ++    +EE D  K 
Subjt:  KRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYD--IEIVIQKQLQDTDVSKHQGRLLIPMKK-VSHYFATNRENEFLS---HQEEGDKNKN

Query:  GLKVLIID
        G+K +I++
Subjt:  GLKVLIID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGGAGAGATCATCAAGCAAGAAGAGGAAGAACAATGCTTCCGATTTGGCGCCGACGAAGGTGAAGCGAAAGGAAGTAATCTTTTCGACGACAATCGAGATGCC
GACACTGTTGAGAGACCGGATCAACGAGATGCGCGGCTACGACATCGAAATCGTGATTCAAAAGCAACTGCAGGACACCGATGTGAGCAAGCACCAAGGTCGATTACTAA
TTCCAATGAAGAAAGTATCACATTATTTTGCCACGAATAGGGAGAATGAGTTTTTAAGCCATCAAGAAGAAGGTGACAAGAATAAGAACGGTTTGAAAGTGCTCATCATT
GATCCCAATGATTTTGATGCTGGAGCTGTCACCTCTAATCTCTGCTTTGCTTTGGTTAAACTTGATATTAGTGAAGGAATCTTTAAATTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGGAGAGATCATCAAGCAAGAAGAGGAAGAACAATGCTTCCGATTTGGCGCCGACGAAGGTGAAGCGAAAGGAAGTAATCTTTTCGACGACAATCGAGATGCC
GACACTGTTGAGAGACCGGATCAACGAGATGCGCGGCTACGACATCGAAATCGTGATTCAAAAGCAACTGCAGGACACCGATGTGAGCAAGCACCAAGGTCGATTACTAA
TTCCAATGAAGAAAGTATCACATTATTTTGCCACGAATAGGGAGAATGAGTTTTTAAGCCATCAAGAAGAAGGTGACAAGAATAAGAACGGTTTGAAAGTGCTCATCATT
GATCCCAATGATTTTGATGCTGGAGCTGTCACCTCTAATCTCTGCTTTGCTTTGGTTAAACTTGATATTAGTGAAGGAATCTTTAAATTTTTATGA
Protein sequenceShow/hide protein sequence
MGVERSSSKKRKNNASDLAPTKVKRKEVIFSTTIEMPTLLRDRINEMRGYDIEIVIQKQLQDTDVSKHQGRLLIPMKKVSHYFATNRENEFLSHQEEGDKNKNGLKVLII
DPNDFDAGAVTSNLCFALVKLDISEGIFKFL