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Sed0014475 (gene) of Chayote v1 genome

Gene IDSed0014475
OrganismSechium edule (Chayote v1)
DescriptionTHO complex subunit 3
Genome locationLG08:40132760..40135234
RNA-Seq ExpressionSed0014475
SyntenySed0014475
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process)
GO:0000445 - THO complex part of transcription export complex (cellular component)
GO:0005509 - calcium ion binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR020472 - G-protein beta WD-40 repeat
IPR024977 - Anaphase-promoting complex subunit 4, WD40 domain
IPR036322 - WD40-repeat-containing domain superfamily
IPR040132 - TREX component Tex1/THOC3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149572.1 THO complex subunit 3 [Cucumis sativus]4.1e-17594.27Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFES
        QADEGIFRIFGFES
Subjt:  QADEGIFRIFGFES

XP_022155009.1 THO complex subunit 3 isoform X2 [Momordica charantia]2.2e-17392.65Show/hide
Query:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC
        E A+  FKNL+SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+ KC
Subjt:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC

Query:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP
        S Q ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRP+ETLMAHTAGCYCIAIDP
Subjt:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP

Query:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
        VG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
Subjt:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA

Query:  DEGIFRIFGFESA
        DEGIFRIFGFESA
Subjt:  DEGIFRIFGFESA

XP_022946738.1 THO complex subunit 3 [Cucurbita moschata]7.7e-17493.33Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFESA
        QADEGIFRIFGFESA
Subjt:  QADEGIFRIFGFESA

XP_030446900.1 THO complex subunit 3 [Syzygium oleosum]6.1e-17190.22Show/hide
Query:  EESASSI---FKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        EE A+++   +KNL SREYQGHKKKVHSVAWNC G K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  EESASSI---FKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

Query:  NAKCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCI
        + KCS Q ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNM+GEMFFLTTGNGTVEVL  PSLRPI+TLMAHTAGCYCI
Subjt:  NAKCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCI

Query:  AIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN
        AIDPVG YFAVGSADSLVSLWDIS+MLCVRTFT+LEWPVRTISFNHTG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN
Subjt:  AIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN

Query:  KYQADEGIFRIFGFESA
        KYQADEG+FRIFGFESA
Subjt:  KYQADEGIFRIFGFESA

XP_038905145.1 THO complex subunit 3 [Benincasa hispida]8.3e-17694.6Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEESA  IFKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFESA
        QADEGIFRIFGFE+A
Subjt:  QADEGIFRIFGFESA

TrEMBL top hitse value%identityAlignment
A0A0A0L651 WD_REPEATS_REGION domain-containing protein2.0e-17594.27Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFES
        QADEGIFRIFGFES
Subjt:  QADEGIFRIFGFES

A0A1S3BM38 THO complex subunit 32.0e-17594.27Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFES
        QADEGIFRIFGFES
Subjt:  QADEGIFRIFGFES

A0A6J1DNX6 THO complex subunit 3 isoform X21.1e-17392.65Show/hide
Query:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC
        E A+  FKNL+SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+ KC
Subjt:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC

Query:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP
        S Q ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRP+ETLMAHTAGCYCIAIDP
Subjt:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP

Query:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
        VG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
Subjt:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA

Query:  DEGIFRIFGFESA
        DEGIFRIFGFESA
Subjt:  DEGIFRIFGFESA

A0A6J1G4N9 THO complex subunit 33.7e-17493.33Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFESA
        QADEGIFRIFGFESA
Subjt:  QADEGIFRIFGFESA

A0A6J1KZA7 THO complex subunit 33.7e-17493.33Show/hide
Query:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA
        MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN 
Subjt:  MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNA

Query:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI
        KCS Q ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSLRPIETLMAHTAGCYCIAI
Subjt:  KCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAI

Query:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
        DPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Subjt:  DPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY

Query:  QADEGIFRIFGFESA
        QADEGIFRIFGFESA
Subjt:  QADEGIFRIFGFESA

SwissProt top hitse value%identityAlignment
P14197 WD repeat-containing protein AAC32.3e-6436.04Show/hide
Query:  ASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGK-----------------LKDVELKGHTDSVDQLCWDPKHSDLIATAS
        AS  F    ++++ G+KKK  SVAWN  G K+AS   D   RVW+ DP G+                    + +ELKGH  S++++ W PK++DL+A+A 
Subjt:  ASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGK-----------------LKDVELKGHTDSVDQLCWDPKHSDLIATAS

Query:  GDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFN-YEVNEISWNMTGEMFFLTTGNGTVEVLE-----NPS
         DK +++WD +  KC      + ENI++ + PDG  I    RDD L ++D+   K +   KFN  E+N++ W+  G++  +    G +E  +        
Subjt:  GDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFN-YEVNEISWNMTGEMFFLTTGNGTVEVLE-----NPS

Query:  LRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSV
        ++ ++TL  HTA  YC+  DP G+Y A GSADS+VSLWDI  M+CV+TF +  +P R++SF+  G++IA++S +  I+I ++++ + +H I C + ++S+
Subjt:  LRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSV

Query:  EWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES
         W+P   LLAYA  + N+   D  I R+FG+ S
Subjt:  EWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES

Q29RH4 THO complex subunit 31.1e-9050.33Show/hide
Query:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN
        ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R  KC       GEN
Subjt:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN

Query:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA
        INI + PDG  IAVGN+DD +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH + C CI  DP+G+YFA GSA
Subjt:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI
        D+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Subjt:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI

Query:  FG
        FG
Subjt:  FG

Q8VE80 THO complex subunit 31.1e-9050.33Show/hide
Query:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN
        ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R  KC       GEN
Subjt:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN

Query:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA
        INI + PDG  IAVGN+DD +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH + C CI  DP+G+YFA GSA
Subjt:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI
        D+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Subjt:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI

Query:  FG
        FG
Subjt:  FG

Q96J01 THO complex subunit 31.5e-9050.33Show/hide
Query:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN
        ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R  KC       GEN
Subjt:  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGEN

Query:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA
        INI + PDG  IAVGN+DD +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH + C CI  DP+G+YFA GSA
Subjt:  INITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI
        D+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Subjt:  DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI

Query:  FG
        FG
Subjt:  FG

Q9FKT5 THO complex subunit 38.6e-16083.12Show/hide
Query:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC
        E  +  FK+L SREYQGHKKKVHSVAWN  G K+ASGSVDQTAR+W+I+PHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+ KC
Subjt:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC

Query:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP
        + Q ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+H+ KFNYEVNEI+WNM G+ FFLTTG GTVEVL  PSL+P++TL AHTAGCYCIAIDP
Subjt:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP

Query:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ
         G YFAVGSADSLVSLWDIS MLC+RTFT+LEWPVRTISFN++GEYIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY 
Subjt:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ

Query:  ADEGIFRIFGFESA
         DEG+FRIFGFES+
Subjt:  ADEGIFRIFGFESA

Arabidopsis top hitse value%identityAlignment
AT1G11160.1 Transducin/WD40 repeat-like superfamily protein7.3e-1321.25Show/hide
Query:  VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA
        V+ +++N    +      +G +++ +    + +     H + C  +   P GE+ A GS+D+ + +WD  +  C++T+      + TI F+  G ++ S 
Subjt:  VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA

Query:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG
          D  + + ++  G+ +H+  C    + S++++P   LLA    D+     D   F + G
Subjt:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG

AT5G08390.1 Transducin/WD40 repeat-like superfamily protein1.7e-1423.75Show/hide
Query:  VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA
        ++ ++++ +  +      +GT+++ +    + + TL  H + C  +   P GE+FA GS D+ + +WDI +  C+ T+      V  + F   G +I S 
Subjt:  VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA

Query:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG
         ED  + + ++  G+ +H+       + S++++P   LLA    DK     D   F + G
Subjt:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG

AT5G25150.1 TBP-associated factor 57.1e-1624.71Show/hide
Query:  YQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC-----SHQTELSG
        Y+GH   V    ++  G   AS S D+TAR+W +D     +++ +  + GH   VD + W P + + IAT S DKTVRLWD +  +C      H++ +  
Subjt:  YQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC-----SHQTELSG

Query:  ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVG
          +++   PDG ++A G+ D                                         GT+ + +  + R I  LM H +  + ++    G   A G
Subjt:  ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVG

Query:  SADSLVSLWDI----------------SQMLCVRTFTRLEWPVRTISFNHTGEYIASAS
        SAD  V LWD+                +++  +RTF     PV  + F+      A+ +
Subjt:  SADSLVSLWDI----------------SQMLCVRTFTRLEWPVRTISFNHTGEYIASAS

AT5G56130.1 Transducin/WD40 repeat-like superfamily protein6.1e-16183.12Show/hide
Query:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC
        E  +  FK+L SREYQGHKKKVHSVAWN  G K+ASGSVDQTAR+W+I+PHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+ KC
Subjt:  ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKC

Query:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP
        + Q ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+H+ KFNYEVNEI+WNM G+ FFLTTG GTVEVL  PSL+P++TL AHTAGCYCIAIDP
Subjt:  SHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDP

Query:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ
         G YFAVGSADSLVSLWDIS MLC+RTFT+LEWPVRTISFN++GEYIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY 
Subjt:  VGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ

Query:  ADEGIFRIFGFESA
         DEG+FRIFGFES+
Subjt:  ADEGIFRIFGFESA

AT5G67320.1 WD-40 repeat family protein2.0e-2327.92Show/hide
Query:  KKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTEL-SGENINITYKPD
        K V ++ WN  G  +A+GS D  AR+W +    +G+L    L  H   +  L W+ K  D + T S D+T  +WD +  +   Q E  SG  +++ ++ +
Subjt:  KKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTEL-SGENINITYKPD

Query:  GTHIAVGNRDDELTILDVRKFKPIHK-SKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGE---------YFAVG
            A  + D  + +  + + +P    +    EVN + W+ TG +    + + T ++        +  L  HT   Y I   P G            A  
Subjt:  GTHIAVGNRDDELTILDVRKFKPIHK-SKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGE---------YFAVG

Query:  SADSLVSLWD--ISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLA
        S DS V LWD  + +MLC  +F     PV +++F+  GEYIAS S D  I I +++ G+ V        +  V WN + N +A
Subjt:  SADSLVSLWD--ISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATCAGCGTCGTCGATTTTCAAGAATCTTGAGAGCAGGGAGTATCAGGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCTTGAAGGTCGC
TTCCGGCTCCGTCGATCAAACCGCTCGAGTTTGGCATATTGACCCTCACGGACATGGCAAGCTCAAGGACGTTGAGTTGAAAGGACACACCGACAGTGTAGATCAGCTCT
GTTGGGACCCTAAACATTCTGATCTTATAGCCACTGCCTCTGGGGATAAGACAGTTCGCCTCTGGGATGCTCGTAATGCCAAATGCTCCCACCAAACGGAGCTCAGTGGG
GAGAATATCAACATCACCTACAAACCCGATGGCACGCACATAGCCGTTGGGAATCGGGATGATGAACTCACTATCCTCGATGTTAGAAAGTTTAAGCCAATTCACAAGAG
CAAGTTCAATTACGAGGTGAATGAAATTTCTTGGAACATGACTGGGGAGATGTTTTTTCTAACAACTGGAAATGGTACTGTTGAAGTACTGGAAAACCCGTCCCTTCGAC
CAATAGAAACTCTTATGGCTCATACAGCCGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGAGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGAT
ATCTCTCAGATGCTCTGTGTGCGTACGTTTACAAGACTCGAATGGCCCGTCCGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGATTTGTT
CATTGATATATCCAATGTTCAAACGGGACGAACAGTTCATCAGATTCCTTGTCGGGCTGCGATGAATAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTG
GGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATCAGCGTCGTCGATTTTCAAGAATCTTGAGAGCAGGGAGTATCAGGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCTTGAAGGTCGC
TTCCGGCTCCGTCGATCAAACCGCTCGAGTTTGGCATATTGACCCTCACGGACATGGCAAGCTCAAGGACGTTGAGTTGAAAGGACACACCGACAGTGTAGATCAGCTCT
GTTGGGACCCTAAACATTCTGATCTTATAGCCACTGCCTCTGGGGATAAGACAGTTCGCCTCTGGGATGCTCGTAATGCCAAATGCTCCCACCAAACGGAGCTCAGTGGG
GAGAATATCAACATCACCTACAAACCCGATGGCACGCACATAGCCGTTGGGAATCGGGATGATGAACTCACTATCCTCGATGTTAGAAAGTTTAAGCCAATTCACAAGAG
CAAGTTCAATTACGAGGTGAATGAAATTTCTTGGAACATGACTGGGGAGATGTTTTTTCTAACAACTGGAAATGGTACTGTTGAAGTACTGGAAAACCCGTCCCTTCGAC
CAATAGAAACTCTTATGGCTCATACAGCCGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGAGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGAT
ATCTCTCAGATGCTCTGTGTGCGTACGTTTACAAGACTCGAATGGCCCGTCCGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGATTTGTT
CATTGATATATCCAATGTTCAAACGGGACGAACAGTTCATCAGATTCCTTGTCGGGCTGCGATGAATAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTG
GGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA
Protein sequenceShow/hide protein sequence
MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSG
ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWD
ISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFESA