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Sed0014489 (gene) of Chayote v1 genome

Gene IDSed0014489
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:46040731..46041562
RNA-Seq ExpressionSed0014489
SyntenySed0014489
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4303875.1 unnamed protein product [Prunus armeniaca]8.8e-0429.7Show/hide
Query:  PDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGLLQVLCLSQVPPHPILVESDAFSVINAI
        P+V      +W      ++K+N D ++     +GSVGW +RD+    ++VG + ++   SA+ ++   IRE LL  +C+ Q     + VESD+  +I  +
Subjt:  PDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGLLQVLCLSQVPPHPILVESDAFSVINAI

Query:  C
        C
Subjt:  C
XP_028961707.1 uncharacterized protein LOC114826102 [Malus domestica]5.1e-0430.84Show/hide
Query:  DPDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGL-LQVLCLSQVPPHPILVESDAFSVIN
        D   + +SA  W+       KLN + ++ K  ++G VGW+LR+ + IP MVG     +  S+ + +  TIR+GL + VL    V    + VESD+  ++ 
Subjt:  DPDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGL-LQVLCLSQVPPHPILVESDAFSVIN

Query:  AICNDCQ
         +  + Q
Subjt:  AICNDCQ
TrEMBL top hitse value%identityAlignment
A0A6J5WV05 RNase H domain-containing protein4.2e-0429.7Show/hide
Query:  PDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGLLQVLCLSQVPPHPILVESDAFSVINAI
        P+V      +W      ++K+N D ++     +GSVGW +RD+    ++VG + ++   SA+ ++   IRE LL  +C+ Q     + VESD+  +I  +
Subjt:  PDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGLLQVLCLSQVPPHPILVESDAFSVINAI

Query:  C
        C
Subjt:  C
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCTCACTTGAGGAGTCTTAAAGTTGGAGGTCCCAAGTCTGTCGATCCTGATGTTGTGGAGGTTAGTGCTCTCGCTTGGTCTCTCTCTCGGCCAAACATTTGGAA
GCTGAATGTCGACACATCTTTTAACAAAATGAACGAGTTGGGCAGTGTTGGTTGGATTCTGAGGGACGCTAGCAGAATTCCGCTTATGGTTGGGGCTCGTCATGAGATTT
TCTGTTCGTCTGCTATGGTTCTTAAAGGTTTCACTATTAGGGAGGGTCTCTTGCAAGTTTTATGTCTTAGTCAAGTCCCTCCTCATCCTATCTTGGTTGAATCTGACGCA
TTTTCTGTTATCAATGCCATTTGTAATGATTGTCAAGATTTCAATTAA
mRNA sequenceShow/hide mRNA sequence
CTTTACTTAAAATCTCTCAAAAGGCTTGATCTCATTTCTTTCCCTTGTTATCTAACATGTCCCCTCACTTGAGGAGTCTTAAAGTTGGAGGTCCCAAGTCTGTCGATCCT
GATGTTGTGGAGGTTAGTGCTCTCGCTTGGTCTCTCTCTCGGCCAAACATTTGGAAGCTGAATGTCGACACATCTTTTAACAAAATGAACGAGTTGGGCAGTGTTGGTTG
GATTCTGAGGGACGCTAGCAGAATTCCGCTTATGGTTGGGGCTCGTCATGAGATTTTCTGTTCGTCTGCTATGGTTCTTAAAGGTTTCACTATTAGGGAGGGTCTCTTGC
AAGTTTTATGTCTTAGTCAAGTCCCTCCTCATCCTATCTTGGTTGAATCTGACGCATTTTCTGTTATCAATGCCATTTGTAATGATTGTCAAGATTTCAATTAATTTGGT
AATGTCCTGCGTGATATTACAGACTTATCTGCTTGGTTGGATGTAGTCTCTTTTATTCATTGTAAGAGGGATTGTAATAGGGTGGCCAATCTTGTGGCTAAAGCCTTCTA
TGCTTGTTGGTGATTTTTGTTGGTCTCGTTCACTCTATTATATGGAGGAGAATTCTTCTGTTTTTGGAGGGAAATCTCCCCCTGTATATTGTTTCCGC
Protein sequenceShow/hide protein sequence
MSPHLRSLKVGGPKSVDPDVVEVSALAWSLSRPNIWKLNVDTSFNKMNELGSVGWILRDASRIPLMVGARHEIFCSSAMVLKGFTIREGLLQVLCLSQVPPHPILVESDA
FSVINAICNDCQDFN