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Sed0014510 (gene) of Chayote v1 genome

Gene IDSed0014510
OrganismSechium edule (Chayote v1)
DescriptionHTH myb-type domain-containing protein
Genome locationLG05:41708298..41710398
RNA-Seq ExpressionSed0014510
SyntenySed0014510
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604776.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]5.3e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

KAG7034901.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

XP_022947230.1 uncharacterized protein LOC111451155 [Cucurbita moschata]5.3e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

XP_022970836.1 two-component response regulator ARR10-like [Cucurbita maxima]5.3e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

XP_023533211.1 uncharacterized protein LOC111795167 [Cucurbita pepo subsp. pepo]5.3e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KBB2 HTH myb-type domain-containing protein2.4e-4182.54Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN
        MI+GFDLNEEAK IDE F + NS+N     NNGSMEE EKEEE E+ R R  +G+VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMN
Subjt:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN

Query:  VRGLSIAHVKSHLQMYRSKKLDESGQ
        VRGLSIAHVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSIAHVKSHLQMYRSKKLDESGQ

A0A1S3BJ91 probable transcription factor KAN2 isoform X25.4e-4181.75Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN
        MI+GFDLNEEAK +DE F + NS+N     NNGSMEE EKEEE ++ R R  +GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMN
Subjt:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN

Query:  VRGLSIAHVKSHLQMYRSKKLDESGQ
        VRGLSIAHVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSIAHVKSHLQMYRSKKLDESGQ

A0A1S3BK41 uncharacterized protein LOC103490495 isoform X15.4e-4181.75Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN
        MI+GFDLNEEAK +DE F + NS+N     NNGSMEE EKEEE ++ R R  +GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMN
Subjt:  MISGFDLNEEAKAIDEEFEDENSSN-----NNGSMEE-EKEEEEEDGRRR--NGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMN

Query:  VRGLSIAHVKSHLQMYRSKKLDESGQ
        VRGLSIAHVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSIAHVKSHLQMYRSKKLDESGQ

A0A6J1G6A3 uncharacterized protein LOC1114511552.6e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

A0A6J1I531 two-component response regulator ARR10-like2.6e-4386.44Show/hide
Query:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH
        MI+GFDLNEEA AIDE    ENSS+NNGS+EEEKEEE++   RR+G VRKYSRSKMPRLRWTPDLHLAFVNAVERLGG ERATPKLVLQLMNVRGLSIAH
Subjt:  MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAH

Query:  VKSHLQMYRSKKLDESGQ
        VKSHLQMYRSKKLDESGQ
Subjt:  VKSHLQMYRSKKLDESGQ

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH16.2e-1862.86Show/hide
Query:  GRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRS
        G  R G VR+Y+RS++PR+RWT ++H  FV AVE LGG + ATPK +LQLM V+G+SI+H+KSHLQMYRS
Subjt:  GRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRS

A3AWH5 Myb family transcription factor MOF11.1e-2264.56Show/hide
Query:  GRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQG
        G  RNG+VR+Y RSK+PRLRWT +LH +FV A+E LGG ++ATPKL+LQLM V+GL+I+HVKSHLQMYR  +L   G G
Subjt:  GRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQG

Q700D9 Putative Myb family transcription factor At1g146008.6e-2061.64Show/hide
Query:  GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ
        G VR Y RS +PRLRWTP+LH +FV+AV+ LGG  +ATPKLVL++M+V+GL+I+HVKSHLQMYR  ++   G+
Subjt:  GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ

Q93WJ9 Transcription repressor KAN12.2e-1567.24Show/hide
Query:  KMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK
        + PR+RWT  LH  FV+AVE LGG ERATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Subjt:  KMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK

Q9FJV5 Probable transcription factor KAN43.4e-1656.96Show/hide
Query:  DGRRRNGSVRKYSRS-KMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESG
        D +R + S+    RS + PR+RWT  LH  FV+AV+ LGG ERATPK VL+LMNV+ L++AHVKSHLQMYR+ K  + G
Subjt:  DGRRRNGSVRKYSRS-KMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESG

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein6.1e-2161.64Show/hide
Query:  GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ
        G VR Y RS +PRLRWTP+LH +FV+AV+ LGG  +ATPKLVL++M+V+GL+I+HVKSHLQMYR  ++   G+
Subjt:  GSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ

AT2G02060.1 Homeodomain-like superfamily protein1.0e-2063.75Show/hide
Query:  EEDGRRRNGS--------VRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYR
        +  GR  NGS        VR Y RS +PRLRWTPDLH  FV+AVE LGG  RATPKLVL++M+V+GL+I+HVKSHLQMYR
Subjt:  EEDGRRRNGS--------VRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYR

AT2G38300.1 myb-like HTH transcriptional regulator family protein6.1e-2962.16Show/hide
Query:  ENSSNNNGSMEEEKEEEEEDGRR-------------RNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQM
        E     N   EEE+EEEEE+G               +   VR Y RSK+PRLRWTPDLHL FV AVERLGG ERATPKLV Q+MN++GLSIAHVKSHLQM
Subjt:  ENSSNNNGSMEEEKEEEEEDGRR-------------RNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQM

Query:  YRSKKLDESGQ
        YRSKK+D+ GQ
Subjt:  YRSKKLDESGQ

AT2G40260.1 Homeodomain-like superfamily protein3.6e-2959.82Show/hide
Query:  NEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQM
        +EE +  +EE   + S ++N   EE      +  ++  GSVR Y+RSK PRLRWTP+LH+ F+ AVERLGG +RATPKLVLQLMNV+GLSIAHVKSHLQM
Subjt:  NEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQM

Query:  YRSKKLDESGQG
        YRSKK DE  +G
Subjt:  YRSKKLDESGQG

AT2G42660.1 Homeodomain-like superfamily protein8.3e-2665.66Show/hide
Query:  DENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ
        +E    NN   EEE   E+ED    N  VR+Y RS MPRLRWTPDLHL+FV AV+RLGG +RATPKLVL++MN++GLSIAHVKSHLQMYRSKKL+ S +
Subjt:  DENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAGCGGGTTCGATTTGAACGAAGAAGCGAAGGCCATTGATGAGGAATTCGAAGACGAGAACTCGAGCAACAACAATGGAAGCATGGAGGAAGAGAAAGAAGAAGA
AGAAGAAGATGGGAGGAGAAGAAATGGGAGTGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTTGCCTTTGTAAATGCTGTTG
AAAGACTTGGTGGACTAGAAAGGGCAACTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGCCTCAGCATTGCCCATGTCAAGAGTCATTTGCAGATGTATCGAAGT
AAGAAGCTGGATGAGTCTGGACAAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAAGCGGGTTCGATTTGAACGAAGAAGCGAAGGCCATTGATGAGGAATTCGAAGACGAGAACTCGAGCAACAACAATGGAAGCATGGAGGAAGAGAAAGAAGAAGA
AGAAGAAGATGGGAGGAGAAGAAATGGGAGTGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTTGCCTTTGTAAATGCTGTTG
AAAGACTTGGTGGACTAGAAAGGGCAACTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGCCTCAGCATTGCCCATGTCAAGAGTCATTTGCAGATGTATCGAAGT
AAGAAGCTGGATGAGTCTGGACAAGGTTAG
Protein sequenceShow/hide protein sequence
MISGFDLNEEAKAIDEEFEDENSSNNNGSMEEEKEEEEEDGRRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGLERATPKLVLQLMNVRGLSIAHVKSHLQMYRS
KKLDESGQG