; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014529 (gene) of Chayote v1 genome

Gene IDSed0014529
OrganismSechium edule (Chayote v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationLG06:15156441..15172910
RNA-Seq ExpressionSed0014529
SyntenySed0014529
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591843.1 hypothetical protein SDJN03_14189, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5380.13Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MH P+        EDSS SVEL TSI  NGDLQEEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T+ELDQLLE APFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+LRSIQRR+DNIDRAISMGN PDT S QSSSQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

XP_004144641.1 uncharacterized protein LOC101218072 [Cucumis sativus]7.6e-5584.03Show/hide
Query:  HSPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        +S +EDS+VS ELETSI  NGDLQE ND+ N NLG SNALANGLSS+LINII+DFDSKADDTLKSQ+ LSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  HSPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  NVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQP
        NVRKRVLSLNS+LR+IQRR+DNIDRAI+MGNLPDTRS  SSSQP
Subjt:  NVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQP

XP_022936774.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata]3.8e-5480.77Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MHSP+        EDSSVSVELETSI  NGDL+EEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T+ELDQLLE APFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+L SIQRR+DNIDRAISMGN PDT S QSSSQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

XP_022976873.1 uncharacterized protein LOC111477110 [Cucurbita maxima]3.8e-5480.13Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MHSP+        EDSS SVELETSI  NG+L+EEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T+ELDQLLEDAPFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+LRSIQRR+DNIDRAISMGN PDT S QS SQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

XP_023535159.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo]7.6e-5581.41Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MHSP+        EDS+VSVELETSI  NG LQEEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T ELDQLLEDAPFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+LRSIQRR+DNIDRAISMGN PDT S QSSSQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 71.2e-5383.33Show/hide
Query:  HSPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS
        +S +EDS+VS ELETSI   GDLQE ND  N NLG SNALANGLSS+LINII+DFDSKADDTLKSQ+ LSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS
Subjt:  HSPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRIS

Query:  NVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQP
        NVRKRVLSLNS+LR+IQRRVDNIDRAI+MGNLPDTRS  +SSQP
Subjt:  NVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQP

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 72.2e-5277.3Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLT-------SELDQLL
        MHSP+        EDSSVSVELETSI  NGDL+EEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T       +ELDQLL
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLT-------SELDQLL

Query:  EDAPFPFIMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        E APFPFIMQHASRIS+VRKRVLSLNS+L SIQRR+DNIDRAISMGN PDT S QSSSQ Q+G
Subjt:  EDAPFPFIMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 71.8e-5480.77Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MHSP+        EDSSVSVELETSI  NGDL+EEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T+ELDQLLE APFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+L SIQRR+DNIDRAISMGN PDT S QSSSQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 76.9e-5481.51Show/hide
Query:  SPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISN
        S ++DS VS ELE SI  NGD++EEND AN+NLG SNALANGLSS+L+NI++DFDSKADDTLKSQSQLS SLDRLTSELDQLLEDAPFPFIMQHA RIS+
Subjt:  SPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISN

Query:  VRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        VRKRVLSLNS+LRS+QRRVDNIDR ISM NLPD RS QSSSQP NG
Subjt:  VRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 71.8e-5480.13Show/hide
Query:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF
        MHSP+        EDSS SVELETSI  NG+L+EEND AN NL  SNALANGLSS+LINII+DFDSKADDTLKSQSQLSSSLDR+T+ELDQLLEDAPFPF
Subjt:  MHSPD--------EDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPF

Query:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG
        IMQHASRIS+VRKRVLSLNS+LRSIQRR+DNIDRAISMGN PDT S QS SQ Q+G
Subjt:  IMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related1.9e-2758.88Show/hide
Query:  GKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPD
        G   A+A GLS++L ++IKDFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V++RV SLN +L+S+QRR+DNID  +S     +
Subjt:  GKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSMLRSIQRRVDNIDRAISMGNLPD

Query:  TRSPQSS
          S +++
Subjt:  TRSPQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGTCCGGACGAGGATAGCAGTGTCTCTGTTGAATTGGAGACTTCTATTAGAACAAACGGTGATCTCCAAGAAGAAAATGATACTGCAAATGTAAATTTGGGAAA
ATCTAATGCTCTAGCAAATGGGCTCTCTTCTTTACTTATCAACATCATAAAGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCC
TTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCTCTA
AATTCCATGTTAAGATCCATACAACGAAGAGTTGATAACATAGATCGGGCAATCTCAATGGGTAACCTACCAGATACTCGTTCCCCTCAAAGTTCCTCACAACCTCAAAA
TGGTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGCCCTAACTTCTCAGCACAGCCGCCCCTTTCTCACACATCTCTTTCTCAGTCTCTTCATCACTTTCTCTGCTGCTCTTTTTTTTTTTACAAAATCTCTGTATTCAA
AGAACGAATGAAGTTCTTCGAAACCTATTTCATCTGCTATTCATCTTCGACGACTCTTTGATAGTAAAAAAGAAATTGCAAGAGATGCATAGTCCGGACGAGGATAGCAG
TGTCTCTGTTGAATTGGAGACTTCTATTAGAACAAACGGTGATCTCCAAGAAGAAAATGATACTGCAAATGTAAATTTGGGAAAATCTAATGCTCTAGCAAATGGGCTCT
CTTCTTTACTTATCAACATCATAAAGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGACCGACTTACTTCAGAACTGGAT
CAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCTCTAAATTCCATGTTAAGATCCATACAACG
AAGAGTTGATAACATAGATCGGGCAATCTCAATGGGTAACCTACCAGATACTCGTTCCCCTCAAAGTTCCTCACAACCTCAAAATGGTTAAAGATTGTACTGTCATCTTT
TGGGAGATTCGAACCACAAACTTTGTGATTGTCAATACATTCAATGTACCAGTTGAATTATGCTCATTTTGATGGTTGAAGATTTGTACGTGTATGCAGTCCTTTGATGG
TCGAAGATTGTACATATATGCAGTCCTTTTAACTCCATTTTATGTATCTGATGTTTTGGCAAATCGTGTGCATCGTTTTATTGGCCCTTTAGTCTTACGACTAGGCTTGA
AACGACACCGTTTCTGAAAGAATTTTGTATGTACAATACCAGCTGCATAGAATATTTATTTTCCATTTATCTAATTGATTTATTTTATAAATTGTTAGTTGAATATAGCA
ATTACGTGAACTAATTGCTTCAAATATATCTTAGGAATCATCAAATGATTAGATTGAAT
Protein sequenceShow/hide protein sequence
MHSPDEDSSVSVELETSIRTNGDLQEENDTANVNLGKSNALANGLSSLLINIIKDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISNVRKRVLSL
NSMLRSIQRRVDNIDRAISMGNLPDTRSPQSSSQPQNG