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Sed0014542 (gene) of Chayote v1 genome

Gene IDSed0014542
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:10942687..10943709
RNA-Seq ExpressionSed0014542
SyntenySed0014542
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48811.1 hypothetical protein EZV62_024686 [Acer yangbiense]7.4e-2031.25Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELE---EEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIW----NMENKI----------------------
        M   + AQ+ ENL + D ++ EI ++    E D V    ++   L  K+L+  +++ + FK V+ +IW    N+E ++                      
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELE---EEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIW----NMENKI----------------------

Query:  ----YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRN-RGKFLRLKIAIDVRRPLRRALKLKSGVMVA
            +D  +I+ E + G   +S++ F    FWV++HD+P  C     A+ L   +G+ I  D   + R+  GKFLR+K+ ID+ RPL+R L+LK      
Subjt:  ----YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRN-RGKFLRLKIAIDVRRPLRRALKLKSGVMVA

Query:  EKWVRLSYEKLSFFCRGCGRIGHRASDCNFV-AIGESIPFP---FGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEG
           V L YE+LS FC  CGR+GH  S+CN V A  E+I  P   FG  LR      + +  SS+  SG    + R  GE SR +  G  ++ + S  +  
Subjt:  EKWVRLSYEKLSFFCRGCGRIGHRASDCNFV-AIGESIPFP---FGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEG

Query:  GRRE
        GR E
Subjt:  GRRE

TXG54199.1 hypothetical protein EZV62_019455 [Acer yangbiense]6.7e-2131.05Show/hide
Query:  QFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHD
        + A++ ENL L +++   + E  EE  +  E +++  L  K+LS  +++ + FK ++ +IWN    +  D ++L E   G   +S ++F   DFW+++H+
Subjt:  QFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHD

Query:  VPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC
        +P  C     A+ L   +G+ +    +  +   G+FLR+K+ ID+ +PL+R L+LK G       V L YE++  FC  CGR+GH   +C
Subjt:  VPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC

XP_042958061.1 uncharacterized protein LOC122293581 [Carya illinoinensis]9.7e-2027.72Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------
        M+    + + E L L D+E QEI E+  E++    S+ +  +   ++S  + +       +PKIWN E KI                             
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------

Query:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W
         +D +++  +   G K + EM+F F  FW++ HD+P A  T +  +KLGS LGK +  D DG +   GKFLR+K+ +D+ +PL R   +       EK W
Subjt:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W

Query:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR
        +   YE+++ FC  CG I H    C  +  G  +    G  L + YG       +SN+   +  G+ R       ++DGG  E G    S E  + ++  
Subjt:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR

Query:  GNL
        G +
Subjt:  GNL

XP_042958241.1 uncharacterized protein LOC122293864 [Carya illinoinensis]9.7e-2027.72Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------
        M+    + + E L L D+E QEI E+  E++    S+ +  +   ++S  + +       +PKIWN E KI                             
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------

Query:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W
         +D +++  +   G K + EM+F F  FW++ HD+P A  T +  +KLGS LGK +  D DG +   GKFLR+K+ +D+ +PL R   +       EK W
Subjt:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W

Query:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR
        +   YE+++ FC  CG I H    C  +  G  +    G  L + YG       +SN+   +  G+ R       ++DGG  E G    S E  + ++  
Subjt:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR

Query:  GNL
        G +
Subjt:  GNL

XP_042961424.1 uncharacterized protein LOC122296079 [Carya illinoinensis]9.7e-2027.72Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------
        M+    + + E L L D+E QEI E+  E++    S+ +  +   ++S  + +       +PKIWN E KI                             
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI-----------------------------

Query:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W
         +D +++  +   G K + EM+F F  FW++ HD+P A  T +  +KLGS LGK +  D DG +   GKFLR+K+ +D+ +PL R   +       EK W
Subjt:  -YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEK-W

Query:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR
        +   YE+++ FC  CG I H    C  +  G  +    G  L + YG       +SN+   +  G+ R       ++DGG  E G    S E  + ++  
Subjt:  VRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEAR

Query:  GNL
        G +
Subjt:  GNL

TrEMBL top hitse value%identityAlignment
A0A5C7GW54 CCHC-type domain-containing protein3.6e-2031.25Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELE---EEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIW----NMENKI----------------------
        M   + AQ+ ENL + D ++ EI ++    E D V    ++   L  K+L+  +++ + FK V+ +IW    N+E ++                      
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELE---EEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIW----NMENKI----------------------

Query:  ----YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRN-RGKFLRLKIAIDVRRPLRRALKLKSGVMVA
            +D  +I+ E + G   +S++ F    FWV++HD+P  C     A+ L   +G+ I  D   + R+  GKFLR+K+ ID+ RPL+R L+LK      
Subjt:  ----YDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRN-RGKFLRLKIAIDVRRPLRRALKLKSGVMVA

Query:  EKWVRLSYEKLSFFCRGCGRIGHRASDCNFV-AIGESIPFP---FGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEG
           V L YE+LS FC  CGR+GH  S+CN V A  E+I  P   FG  LR      + +  SS+  SG    + R  GE SR +  G  ++ + S  +  
Subjt:  EKWVRLSYEKLSFFCRGCGRIGHRASDCNFV-AIGESIPFP---FGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEG

Query:  GRRE
        GR E
Subjt:  GRRE

A0A5C7H981 Uncharacterized protein1.8e-1930.93Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWV
        M  ++ A++ ENL L D++   + E+ EE  V    ++E  L  K+L+  +++ + FK+++ +IW   N    +++I+ E   G   +S + F   DFW+
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWV

Query:  RLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC
        ++HD+   C     A+ L   +G+ +    +  +   GKF+R+K+ ID+ +PL+  L+LK G +     V L YE+L  F   CGRIGH    C
Subjt:  RLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC

A0A5C7HBH6 CCHC-type domain-containing protein3.3e-2131.05Show/hide
Query:  QFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHD
        + A++ ENL L +++   + E  EE  +  E +++  L  K+LS  +++ + FK ++ +IWN    +  D ++L E   G   +S ++F   DFW+++H+
Subjt:  QFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHD

Query:  VPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC
        +P  C     A+ L   +G+ +    +  +   G+FLR+K+ ID+ +PL+R L+LK G       V L YE++  FC  CGR+GH   +C
Subjt:  VPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDC

A0A5C7IMP3 CCHC-type domain-containing protein1.4e-1932.83Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWV
        M+  + A++ E L L ++E   + +L+E      E  L   LA K+LSS  ++ D F  V+PKIW+     +D A+++     G + + +M F    FWV
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWV

Query:  RLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDCNFVA
        ++H VP  C T    R LG+M+G+    D  G     GK++R+++ ID+ +P+R  L++       E  + L YE+L   C  CG IGH   DC+  A
Subjt:  RLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDCNFVA

A0A5C7IV30 CCHC-type domain-containing protein2.3e-1928.06Show/hide
Query:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI----------YDDAVILFEAMAGDKRVSE
        M  A  A + ENL L D++   + E+ EE  +  E +++  L  ++LS  +++ + FK ++ ++WN    +          +  ++I+ E   G + VS+
Subjt:  MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKI----------YDDAVILFEAMAGDKRVSE

Query:  MEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHR
        + F   +FWV++HD+P  C     A+ L   +G  +    D  +   G+F+R+K+ ID+ RPL+R L+LK         V L YE+L  FC  CGR+GH 
Subjt:  MEFAFGDFWVRLHDVPPACHTGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHR

Query:  ASDCNFVAIGESI----PFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGR
          +C      +      P  +G+ L+ P G  +  S    + SG    R + +
Subjt:  ASDCNFVAIGESI----PFPFGEDLREPYGFSRGDSGSSNRFSGRGRGRGRGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCAGCACAGTTTGCTCAAATGATGGAAAATCTAGACCTTAACGATCAAGAAGCACAAGAAATCTTTGAACTTGAAGAAGAAGATGTGGTAGCTTATGAAAGTGA
ACTTGAAGGGGTGCTGGCGTGCAAAATTCTCTCTAGCAATCAGATTAGTTCAGATGTGTTCAAGAAGGTTGTCCCAAAAATATGGAATATGGAAAATAAAATCTATGACG
ATGCGGTGATATTGTTCGAGGCAATGGCAGGGGATAAACGAGTTTCGGAGATGGAGTTCGCATTTGGAGATTTTTGGGTCAGACTGCACGATGTGCCTCCAGCGTGTCAT
ACAGGAAACAATGCAAGGAAACTAGGAAGTATGTTAGGGAAGTTCATAGGATGGGATTGTGATGGAGATAAAAGGAACAGAGGAAAATTTTTAAGGCTCAAAATTGCAAT
CGATGTTCGTAGACCTTTGAGAAGGGCGTTGAAGTTAAAAAGCGGAGTGATGGTGGCTGAGAAATGGGTAAGATTATCGTATGAAAAACTTTCGTTCTTCTGTCGTGGAT
GTGGAAGAATAGGCCACAGGGCCTCTGATTGTAACTTCGTTGCGATTGGAGAGAGTATTCCGTTCCCTTTTGGGGAAGATTTGAGAGAACCATATGGATTTTCTAGGGGA
GATTCAGGGTCGTCGAATAGATTTTCTGGGAGAGGAAGGGGTCGTGGAAGAGGAAGAGGGGAGGTATCTCGCAGCGAGGATGGTGGTTATTTTGAGAAAGGAGTCGAGTC
GAAATCGATCGAAGGTGGGAGAAGAGAGGAAGCTAGGGGGAACTTGAGTTTTCCGGCAGAGGGGCGACACCTTTTTGCAAGTAACGAGTCGCCGGAGACGGCCTTGGGAG
AAGGGGAGGGAAATGAGGAAGGTCGTCAGAAGTTGCAGGAGTTTGTCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCAGCACAGTTTGCTCAAATGATGGAAAATCTAGACCTTAACGATCAAGAAGCACAAGAAATCTTTGAACTTGAAGAAGAAGATGTGGTAGCTTATGAAAGTGA
ACTTGAAGGGGTGCTGGCGTGCAAAATTCTCTCTAGCAATCAGATTAGTTCAGATGTGTTCAAGAAGGTTGTCCCAAAAATATGGAATATGGAAAATAAAATCTATGACG
ATGCGGTGATATTGTTCGAGGCAATGGCAGGGGATAAACGAGTTTCGGAGATGGAGTTCGCATTTGGAGATTTTTGGGTCAGACTGCACGATGTGCCTCCAGCGTGTCAT
ACAGGAAACAATGCAAGGAAACTAGGAAGTATGTTAGGGAAGTTCATAGGATGGGATTGTGATGGAGATAAAAGGAACAGAGGAAAATTTTTAAGGCTCAAAATTGCAAT
CGATGTTCGTAGACCTTTGAGAAGGGCGTTGAAGTTAAAAAGCGGAGTGATGGTGGCTGAGAAATGGGTAAGATTATCGTATGAAAAACTTTCGTTCTTCTGTCGTGGAT
GTGGAAGAATAGGCCACAGGGCCTCTGATTGTAACTTCGTTGCGATTGGAGAGAGTATTCCGTTCCCTTTTGGGGAAGATTTGAGAGAACCATATGGATTTTCTAGGGGA
GATTCAGGGTCGTCGAATAGATTTTCTGGGAGAGGAAGGGGTCGTGGAAGAGGAAGAGGGGAGGTATCTCGCAGCGAGGATGGTGGTTATTTTGAGAAAGGAGTCGAGTC
GAAATCGATCGAAGGTGGGAGAAGAGAGGAAGCTAGGGGGAACTTGAGTTTTCCGGCAGAGGGGCGACACCTTTTTGCAAGTAACGAGTCGCCGGAGACGGCCTTGGGAG
AAGGGGAGGGAAATGAGGAAGGTCGTCAGAAGTTGCAGGAGTTTGTCTCATGA
Protein sequenceShow/hide protein sequence
MDPAQFAQMMENLDLNDQEAQEIFELEEEDVVAYESELEGVLACKILSSNQISSDVFKKVVPKIWNMENKIYDDAVILFEAMAGDKRVSEMEFAFGDFWVRLHDVPPACH
TGNNARKLGSMLGKFIGWDCDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGVMVAEKWVRLSYEKLSFFCRGCGRIGHRASDCNFVAIGESIPFPFGEDLREPYGFSRG
DSGSSNRFSGRGRGRGRGRGEVSRSEDGGYFEKGVESKSIEGGRREEARGNLSFPAEGRHLFASNESPETALGEGEGNEEGRQKLQEFVS