; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014555 (gene) of Chayote v1 genome

Gene IDSed0014555
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE6
Genome locationLG11:34091305..34092674
RNA-Seq ExpressionSed0014555
SyntenySed0014555
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033162.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3490.11Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MS+RRSRQ G SRISDDQII+L+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

XP_004151201.2 transcription factor PRE6 [Cucumis sativus]7.0e-3592.31Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQII+LVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]6.3e-3694.51Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQSG SRISDDQII+LVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]1.6e-3490.11Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MS+RRSRQ G SRISDDQII+L+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]1.6e-3491.21Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQS  SRI+DDQII+LVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator3.4e-3592.31Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQII+LVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE63.4e-3592.31Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQII+LVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE63.4e-3592.31Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQII+LVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE63.1e-3694.51Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MSSRRSRQSG SRISDDQII+LVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like1.7e-3490.11Show/hide
Query:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MS+RRSR SG SRISDDQIIDL+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD +SERLSQLLSTID DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI66.2e-2669.57Show/hide
Query:  MSSR--RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MSSR  RSRQSG+SRI+D+QI DLVSKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVD +SERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSSR--RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM

Q0DUR2 Transcription factor ILI66.2e-2669.57Show/hide
Query:  MSSR--RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MSSR  RSRQSG+SRI+D+QI DLVSKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVD +SERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSSR--RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM

Q8GW32 Transcription factor PRE68.3e-3178.26Show/hide
Query:  MSSR---RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI
        MSSR   RSRQSG+SRISDDQI DLVSKL+ L+PE+R RRSDKVSASKVLQETCNYIRNLHREVD +S+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI

Q9FLE9 Transcription factor PRE11.7e-2875Show/hide
Query:  MSSRRSRQSGTS-RISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MS+RRSRQS ++ RISD+Q+IDLVSKLRQ++PEI + RRSDK SASKVLQETCNYIRNL+REVD +SERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQSGTS-RISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE53.5e-2977.17Show/hide
Query:  MSSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MS+RRSRQ S  SRISDDQ+IDLVSKLRQ +PEI   RRSDKVSASKVLQETCNYIR LHREVD +S+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.9e-3278.26Show/hide
Query:  MSSR---RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI
        MSSR   RSRQSG+SRISDDQI DLVSKL+ L+PE+R RRSDKVSASKVLQETCNYIRNLHREVD +S+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.8e-2668.42Show/hide
Query:  MSSRRSR---QSGTSRISDDQIIDLVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ
        MS RRSR    SGTSRIS+DQI DL+ KL+QL+PE+R  RRSDKVSA++VLQ+TCNYIRNLHREVD +SERLS+LL+  + D+A+AA+IRSL+ Q
Subjt:  MSSRRSR---QSGTSRISDDQIIDLVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.5e-3077.17Show/hide
Query:  MSSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MS+RRSRQ S  SRISDDQ+IDLVSKLRQ +PEI   RRSDKVSASKVLQETCNYIR LHREVD +S+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM

AT5G15160.1 BANQUO 29.8e-2772.22Show/hide
Query:  SSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI
        SSRRSRQ S +SRISDDQI DL+SKLRQ +PEIR +RRS+ VSASKVLQETCNYIRNL++E D +S+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SGTSRISDDQIIDLVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2975Show/hide
Query:  MSSRRSRQSGTS-RISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM
        MS+RRSRQS ++ RISD+Q+IDLVSKLRQ++PEI + RRSDK SASKVLQETCNYIRNL+REVD +SERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQSGTS-RISDDQIIDLVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGATCAAGGCAGTCCGGCACTTCCCGAATCAGCGACGACCAAATCATTGATCTCGTTTCCAAGCTTCGTCAGCTCGTCCCTGAGATTCGCCATCGCCG
CTCCGACAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCATAGAGAAGTTGATGGCATAAGTGAAAGACTCTCTCAGCTGTTGTCTA
CAATAGATGGTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
AACAAACTCCACTTGTTAAATTACACTCTCCCCCTTCATAAACCACTAATCCTTTCTCTAAAGCATTGATCTTCTTCACATCCAACATTTGCATCTCTATTTCCTTTTCT
ACCCCTAGTGAATTTCTTTGTGGTCCTTCTCCTCTTTATAATCCTCTTATCAATTCCCATTCTTCCTTCATACCTAACTAGTTTCTAACTGAAACTACCATCTCTCTTAT
TCTCTCTAACTTTCCACAACTACTTTCCCTTTAAAAAATCACTCTTACATTAACAACCATGTCTAGCAGAAGATCAAGGCAGTCCGGCACTTCCCGAATCAGCGACGACC
AAATCATTGATCTCGTTTCCAAGCTTCGTCAGCTCGTCCCTGAGATTCGCCATCGCCGCTCCGACAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATTACATT
AGAAACTTGCATAGAGAAGTTGATGGCATAAGTGAAAGACTCTCTCAGCTGTTGTCTACAATAGATGGTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCA
ATAGAGGAAGAACAAGAACAAAGGCTGGTTTGGTTTGATAATGCTATATATTTATATATATATATTAGTATTAAATATATATATTATATATATAAGATAAGATATGATGT
TACTATGCTATTTATATGAGTTTTTGATATTCCCTTTTCTAGGTTTTTGGTCCTTAGATCAAAAAAAGGGAAATTTTAAAAAAATGGGTGTATTTTTCCATGAAAAGAGA
AGCTTCCCTTTTATTATTATATATAGGGGTGTAACAAAAATGTATAATAAAAGGACTTGCATTAGCATAGCCTTTTGTTATTTATATAAAGTTTATATAAATACACCAAA
AAAATGTTCCA
Protein sequenceShow/hide protein sequence
MSSRRSRQSGTSRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDGISERLSQLLSTIDGDSAEAAIIRSLIMQ