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Sed0014565 (gene) of Chayote v1 genome

Gene IDSed0014565
OrganismSechium edule (Chayote v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationLG08:38872880..38879540
RNA-Seq ExpressionSed0014565
SyntenySed0014565
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019524.1 hypothetical protein SDJN02_18485 [Cucurbita argyrosperma subsp. argyrosperma]7.6e-8672.53Show/hide
Query:  MQPPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSK
        M PPP PP  SLHS+FFSSLKQVEKRLK D+ SQR AL PP P   P LPV  + SS+ EESLS+PMYLHLPQ+N++S+LQ+SS PP EF+SN   S  K
Subjt:  MQPPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSK

Query:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        SES+  N ID G+NR VDDI+RL+QLLGLG+S  +++L A+SGCNGCEGCE GFY+KIVGLKGPKCGKE+ERLNGWI YF  G GE ERLEPLRLAYLL+
Subjt:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASNG D CLEGLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

KGN65550.1 hypothetical protein Csa_019856 [Cucumis sativus]5.3e-8773.39Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK
        P P+PPC SLHSNFFSSLKQVEKRLKLDH SQR  L P    P PLPV    SST E+SLS+PMYLH PQ+N+SS LQ+SS  PLEF+S+ SQ   S  K
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK

Query:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        SES+   PIDRG+NR VDDI+RLIQLLGL +SC +K+  AK+GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG  EE+RLEPLRLAYLLL
Subjt:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASN  DGCLEGLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

XP_004147438.2 uncharacterized protein LOC101217056 [Cucumis sativus]5.3e-8773.39Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK
        P P+PPC SLHSNFFSSLKQVEKRLKLDH SQR  L P    P PLPV    SST E+SLS+PMYLH PQ+N+SS LQ+SS  PLEF+S+ SQ   S  K
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK

Query:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        SES+   PIDRG+NR VDDI+RLIQLLGL +SC +K+  AK+GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG  EE+RLEPLRLAYLLL
Subjt:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASN  DGCLEGLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

XP_008444181.1 PREDICTED: uncharacterized protein LOC103487596 [Cucumis melo]2.8e-8872.53Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES
        PPP PPC SLHS+FFSSLKQVEKRLKLDH SQR  L PP P+P+      A SST E+ LS+PMYLH PQ+N+SS LQ+SS PPLEF+SN+S S      
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES

Query:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        S SNP   IDRG+NR +DDI+RLIQLLGL +SC +K+L  K GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG GEE+RLEPLRLAYLLL
Subjt:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASNG DGCL+GLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

XP_038895328.1 uncharacterized protein LOC120083579 [Benincasa hispida]3.4e-8672.88Show/hide
Query:  MQPP-PSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---S
        MQPP P PP  SLHSNFFSSLKQVEKRLKLDHQSQR  L P    P   PV    SS+ E+SLS+PMYLH PQ+N+ SALQ+SS PPLEF+SN SQ   S
Subjt:  MQPP-PSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---S

Query:  SSKSESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAY
          KSES+ S  IDRG+N  V DI+RLIQLLGLG SC + +L AK+GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG GEEERLEPLRLAY
Subjt:  SSKSESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAY

Query:  LLLGKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        LL GK+VFASNG DGCLEG+EFPST+EDFLLNDPPA
Subjt:  LLLGKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

TrEMBL top hitse value%identityAlignment
A0A0A0LUG6 Uncharacterized protein2.6e-8773.39Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK
        P P+PPC SLHSNFFSSLKQVEKRLKLDH SQR  L P    P PLPV    SST E+SLS+PMYLH PQ+N+SS LQ+SS  PLEF+S+ SQ   S  K
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQ---SSSK

Query:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        SES+   PIDRG+NR VDDI+RLIQLLGL +SC +K+  AK+GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG  EE+RLEPLRLAYLLL
Subjt:  SESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASN  DGCLEGLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

A0A1S3B9V1 uncharacterized protein LOC1034875961.4e-8872.53Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES
        PPP PPC SLHS+FFSSLKQVEKRLKLDH SQR  L PP P+P+      A SST E+ LS+PMYLH PQ+N+SS LQ+SS PPLEF+SN+S S      
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES

Query:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        S SNP   IDRG+NR +DDI+RLIQLLGL +SC +K+L  K GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG GEE+RLEPLRLAYLLL
Subjt:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASNG DGCL+GLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

A0A5A7UHE6 Uncharacterized protein1.4e-8872.53Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES
        PPP PPC SLHS+FFSSLKQVEKRLKLDH SQR  L PP P+P+      A SST E+ LS+PMYLH PQ+N+SS LQ+SS PPLEF+SN+S S      
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSES

Query:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL
        S SNP   IDRG+NR +DDI+RLIQLLGL +SC +K+L  K GCNGCEGCE GFY+KIVGLKGPKC KE+ERLNGWI +F NG GEE+RLEPLRLAYLLL
Subjt:  SHSNP---IDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLL

Query:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        GKAVFASNG DGCL+GLEFPST+EDFLLNDPPA
Subjt:  GKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

A0A6J1END4 uncharacterized protein LOC1114341551.8e-8572.34Show/hide
Query:  MQPPPSPPCS--SLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSS
        M PPP PP    SLHS+FFSSLKQVEKRLKLD+ SQR AL PP P   P LPV  + SS+ EESLS+PMYLHLPQ+N++S+LQ+SS PP EF+SN   S 
Subjt:  MQPPPSPPCS--SLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSS

Query:  SKSESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYL
         KSES+  N ID G+NR VDDI+RL+QLLGLG+S  +++L A+SGCNGCEGCE GFY+KIVGLKGPKCGKE+ERLNGWI+YF  G GE ERLEPLRLAYL
Subjt:  SKSESSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYL

Query:  LLGKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        L+GKAVFASNG D CLEGLEFPST+EDFLLNDPPA
Subjt:  LLGKAVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

A0A6J1KGL6 uncharacterized protein LOC1114955904.8e-8673.16Show/hide
Query:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSE
        PPP PP  SLHS+FFSSLKQVEKRLKLD+ SQR AL PP P   P LPV  + SS+ EESLS+PMYLHL Q+N++S+LQ+SS PP EF+SN   S  KSE
Subjt:  PPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLP-LPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSE

Query:  SSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLLGK
        S+  N ID G+NR VDDI+RL+QLLG G+S  +K+L A+SGCNGCEGCE GFY+KIVGLKGPKCGKE+ERLNGWI YF  G GE ERLEPLRLAYLL+GK
Subjt:  SSHSNPIDRGENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLLGK

Query:  AVFASNGGDGCLEGLEFPSTIEDFLLNDPPA
        AVFASNGGD CLEGLEFPST+EDFLLNDPPA
Subjt:  AVFASNGGDGCLEGLEFPSTIEDFLLNDPPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCGCCGCCGTCGCCGCCGTGTTCATCTCTTCACTCCAATTTCTTTTCGTCTCTAAAGCAGGTTGAAAAGCGCCTCAAATTAGACCATCAATCGCAACGCTACGC
TCTTGATCCACCGTTGCCGTTGCCGTTGCCATTGCCAGTAGTAGAAGCTGTTTCTTCAACACCCGAGGAATCACTGAGCTCTCCGATGTATCTTCATTTGCCCCAATCCA
ACTCAAGTTCCGCCCTACAACAAAGCAGCGGTCCCCCATTGGAGTTCATCTCTAATTTCTCACAATCTTCTTCGAAATCGGAATCGAGTCATTCAAATCCCATCGATCGT
GGCGAAAATCGGGCTGTGGATGACATTGAACGGCTGATTCAACTTCTAGGGTTAGGAGAATCCTGTGTGAAAAAGGATTTGGAAGCTAAGAGTGGCTGTAATGGCTGTGA
GGGTTGCGAAAGGGGGTTTTACACTAAGATTGTTGGCTTAAAAGGCCCCAAATGCGGGAAGGAGTTGGAGAGGTTGAATGGATGGATCAACTACTTTTTGAATGGCGATG
GCGAAGAAGAGAGATTAGAGCCTCTTAGATTGGCATATCTGCTGCTGGGAAAAGCTGTTTTTGCTTCTAATGGCGGTGATGGGTGTTTGGAAGGATTGGAATTCCCTTCG
ACTATAGAGGATTTCTTGCTGAATGATCCTCCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
CACATAAATGGCGCCAAATTTCCTCCAACATTGTTCGCAGCTTCACCGGGGAAAAAATGCAGCCGCCGCCGTCGCCGCCGTGTTCATCTCTTCACTCCAATTTCTTTTCG
TCTCTAAAGCAGGTTGAAAAGCGCCTCAAATTAGACCATCAATCGCAACGCTACGCTCTTGATCCACCGTTGCCGTTGCCGTTGCCATTGCCAGTAGTAGAAGCTGTTTC
TTCAACACCCGAGGAATCACTGAGCTCTCCGATGTATCTTCATTTGCCCCAATCCAACTCAAGTTCCGCCCTACAACAAAGCAGCGGTCCCCCATTGGAGTTCATCTCTA
ATTTCTCACAATCTTCTTCGAAATCGGAATCGAGTCATTCAAATCCCATCGATCGTGGCGAAAATCGGGCTGTGGATGACATTGAACGGCTGATTCAACTTCTAGGGTTA
GGAGAATCCTGTGTGAAAAAGGATTTGGAAGCTAAGAGTGGCTGTAATGGCTGTGAGGGTTGCGAAAGGGGGTTTTACACTAAGATTGTTGGCTTAAAAGGCCCCAAATG
CGGGAAGGAGTTGGAGAGGTTGAATGGATGGATCAACTACTTTTTGAATGGCGATGGCGAAGAAGAGAGATTAGAGCCTCTTAGATTGGCATATCTGCTGCTGGGAAAAG
CTGTTTTTGCTTCTAATGGCGGTGATGGGTGTTTGGAAGGATTGGAATTCCCTTCGACTATAGAGGATTTCTTGCTGAATGATCCTCCTGCTTAATAGGCTTATCATTGA
TAATTATGGAGAAATTGGCTGATGATAGACAACCTCTCTAATCCATTTCCTCCAAGTGTTTCCAAAGTCATTGGCCATAAGAGGAAAATGGATATGAATAAGCAACACCA
GAGCTCAAGCAGGATCGCTTCAACAAATGATTTTTGGTTTTGTCCAAAGGTGGCTCTGCAAGAGATTTAACAAATGAAAACCCTCACTTATGGCAATATCCAAGAGAGAA
AACATTCATATGATTTGAATTGGTAAGCTGAATGACAACATTTTGGTGGCCTTTCTCTCTTAATCTTCTCTTTGCATAGAACTCATGAGATAATTCAAATCAAATCTAAG
CGAATCAAACTACTTGCCACTTTATTTGTTTACACTAACAATGGACTTTACAAGTTGTGATATAATGGGATCATGAAATTGAGTG
Protein sequenceShow/hide protein sequence
MQPPPSPPCSSLHSNFFSSLKQVEKRLKLDHQSQRYALDPPLPLPLPLPVVEAVSSTPEESLSSPMYLHLPQSNSSSALQQSSGPPLEFISNFSQSSSKSESSHSNPIDR
GENRAVDDIERLIQLLGLGESCVKKDLEAKSGCNGCEGCERGFYTKIVGLKGPKCGKELERLNGWINYFLNGDGEEERLEPLRLAYLLLGKAVFASNGGDGCLEGLEFPS
TIEDFLLNDPPA