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Sed0014716 (gene) of Chayote v1 genome

Gene IDSed0014716
OrganismSechium edule (Chayote v1)
DescriptionVQ domain-containing protein
Genome locationLG02:41297794..41298243
RNA-Seq ExpressionSed0014716
SyntenySed0014716
Gene Ontology termsNA
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]1.1e-1962.38Show/hide
Query:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP
        N  QLRGPRPPPL V+KSS  IFKKS T  P     R P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SS   V ++           GEEF SA +CIP
Subjt:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP

Query:  S
        S
Subjt:  S

KAF3950793.1 hypothetical protein CMV_023496 [Castanea mollissima]1.5e-1155.84Show/hide
Query:  RNNPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAA
        R +  +L+GPRP PLAVSK S+KI K +       RPPVI+YL SPK+IHVRPEEF   VQ+LTGN + A     AA
Subjt:  RNNPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAA

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2472.55Show/hide
Query:  PLQLRGPRPPPLAVSKSSAKIFKKSAT--LLPIP--RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC--------PGEEFVSASHCI
        PL+LRGPRPPPL V+KSS KIFKKS T  L PIP  R PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSS  AVVAA+F         PGE  VSA + I
Subjt:  PLQLRGPRPPPLAVSKSSAKIFKKSAT--LLPIP--RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC--------PGEEFVSASHCI

Query:  PS
        PS
Subjt:  PS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]3.3e-1959.22Show/hide
Query:  NPLQLRGPRPPPLAVSKSSA-KIFKKSATLLPIP-------RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFCPG----EEFVSASHC
        N  QLRGPRPPPL V+KSS+  I KKS    P+P       R P+I+YLRSPK+IHVRPEEFKSFVQRLTGN SS   V ++    G    EEFVS  +C
Subjt:  NPLQLRGPRPPPLAVSKSSA-KIFKKSATLLPIP-------RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFCPG----EEFVSASHC

Query:  IPS
        IPS
Subjt:  IPS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]1.1e-1962.38Show/hide
Query:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP
        N  QLRGPRPPPL V+KSS  IFKKS T  P     R P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SS   V ++           GEEF SA +CIP
Subjt:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein1.6e-1959.22Show/hide
Query:  NPLQLRGPRPPPLAVSKSSA-KIFKKSATLLPIP-------RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFCPG----EEFVSASHC
        N  QLRGPRPPPL V+KSS+  I KKS    P+P       R P+I+YLRSPK+IHVRPEEFKSFVQRLTGN SS   V ++    G    EEFVS  +C
Subjt:  NPLQLRGPRPPPLAVSKSSA-KIFKKSATLLPIP-------RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFCPG----EEFVSASHC

Query:  IPS
        IPS
Subjt:  IPS

A0A1R3JJT0 VQ motif-containing protein1.2e-1157.53Show/hide
Query:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP---------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSS
        +L+GPRP PL VS +S+KI KKS+T   +  P         PV++YLRSPKIIHVRPEEF S VQRLTG  S+
Subjt:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP---------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSS

A0A1S3B975 protein MKS1-like5.4e-2062.38Show/hide
Query:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP
        N  QLRGPRPPPL V+KSS  IFKKS T  P     R P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SS   V ++           GEEF SA +CIP
Subjt:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP

Query:  S
        S
Subjt:  S

A0A2P5B814 VQ motif containing protein1.2e-1160.27Show/hide
Query:  LRGPRPPPLAVSKSSAKIFKKSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC
        + GPRP PL + +SSAKI KKS      PR PV+VYLRSPKIIHVRPEEF   VQ+LTG  S+A A   A  C
Subjt:  LRGPRPPPLAVSKSSAKIFKKSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC

A0A5D3DP92 Protein MKS1-like5.4e-2062.38Show/hide
Query:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP
        N  QLRGPRPPPL V+KSS  IFKKS T  P     R P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SS   V ++           GEEF SA +CIP
Subjt:  NPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIP---RPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFC-------PGEEFVSASHCIP

Query:  S
        S
Subjt:  S

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B2.8e-0537.5Show/hide
Query:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA
        GP+P PL V   S KI KK     P P+P                  PV +Y  +P+IIH  P  F + VQRLTG  S++
Subjt:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA

Q8LGD5 Protein MKS14.6e-0845.95Show/hide
Query:  LQLRGPRPPPLAVSKSSAKIFKKSATLLP----------IPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGS
        LQ+ GPRP PL+V K S KI K      P          IPR PV++Y  SPK++H    EF + VQRLTG  S
Subjt:  LQLRGPRPPPLAVSKSSAKIFKKSATLLP----------IPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGS

Q9CA36 VQ motif-containing protein 8, chloroplastic1.2e-0544.62Show/hide
Query:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP-----PVIVYLRSPKIIHVRPEEFKSFVQRLTG
        ++ G RP  L ++  S  I KK+++    PRP     PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP-----PVIVYLRSPKIIHVRPEEFKSFVQRLTG

Q9LS54 VQ motif-containing protein 203.6e-0545Show/hide
Query:  PRPPPLAVSKSSAKIFK----KSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L V+K S  I K     S +    PR PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLAVSKSSAKIFK----KSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.0e-0637.5Show/hide
Query:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA
        GP+P PL V   S KI KK     P P+P                  PV +Y  +P+IIH  P  F + VQRLTG  S++
Subjt:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA

AT1G21326.1 VQ motif-containing protein1.0e-0741.25Show/hide
Query:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA
        GPRP PL V   S KI KK     P P+P                  PVI+Y  SP+IIH  P  F + VQRLTG  S++
Subjt:  GPRPPPLAVSKSSAKIFKKSATLLPIPRP------------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSA

AT1G68450.1 VQ motif-containing protein8.9e-0744.62Show/hide
Query:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP-----PVIVYLRSPKIIHVRPEEFKSFVQRLTG
        ++ G RP  L ++  S  I KK+++    PRP     PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  QLRGPRPPPLAVSKSSAKIFKKSATLLPIPRP-----PVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18360.1 VQ motif-containing protein2.6e-0645Show/hide
Query:  PRPPPLAVSKSSAKIFK----KSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L V+K S  I K     S +    PR PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLAVSKSSAKIFK----KSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 13.3e-0945.95Show/hide
Query:  LQLRGPRPPPLAVSKSSAKIFKKSATLLP----------IPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGS
        LQ+ GPRP PL+V K S KI K      P          IPR PV++Y  SPK++H    EF + VQRLTG  S
Subjt:  LQLRGPRPPPLAVSKSSAKIFKKSATLLP----------IPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAACAATCCGTTGCAATTGCGAGGTCCACGGCCTCCGCCATTGGCGGTGAGCAAATCCTCCGCCAAGATTTTCAAGAAATCGGCGACTCTGCTTCCGATTCCGCG
GCCGCCGGTGATCGTTTACCTGAGATCGCCGAAGATCATCCACGTCCGTCCCGAGGAGTTCAAGAGCTTCGTTCAACGCCTCACCGGAAATGGATCCTCCGCCGGCGCCG
TCGTTGCGGCGGCGTTCTGTCCTGGTGAAGAATTTGTATCCGCCTCTCATTGCATTCCCTCGTAG
mRNA sequenceShow/hide mRNA sequence
GTTACAAGAAACGAAAACAGAAATTGACTGGGTACCAAAACTATATTTTATTAAATTCGAGCAACAAAAAACAGATTCGTTCATAATTCATCGTCATTATATAAATCCAA
GCAATTTGGTTCCCAATTCAGACGGCAAATCCCCAAACCCTAGCCTGTAAAATCGATGAGGAACAATCCGTTGCAATTGCGAGGTCCACGGCCTCCGCCATTGGCGGTGA
GCAAATCCTCCGCCAAGATTTTCAAGAAATCGGCGACTCTGCTTCCGATTCCGCGGCCGCCGGTGATCGTTTACCTGAGATCGCCGAAGATCATCCACGTCCGTCCCGAG
GAGTTCAAGAGCTTCGTTCAACGCCTCACCGGAAATGGATCCTCCGCCGGCGCCGTCGTTGCGGCGGCGTTCTGTCCTGGTGAAGAATTTGTATCCGCCTCTCATTGCAT
TCCCTCGTAG
Protein sequenceShow/hide protein sequence
MRNNPLQLRGPRPPPLAVSKSSAKIFKKSATLLPIPRPPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSAGAVVAAAFCPGEEFVSASHCIPS