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Sed0014742 (gene) of Chayote v1 genome

Gene IDSed0014742
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG11:20507040..20507519
RNA-Seq ExpressionSed0014742
SyntenySed0014742
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]2.5e-3252Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PELSSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE
        D NHITI+E +++   +  NQR+    RIRP ++R    ERL+  + + E
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]2.5e-3252Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PELSSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE
        D NHITI+E +++   +  NQR+    RIRP ++R    ERL+  + + E
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.5e-3252Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PELSSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE
        D NHITI+E +++   +  NQR+    RIRP ++R    ERL+  + + E
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.5e-3252Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PELSSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE
        D NHITI+E +++   +  NQR+    RIRP ++R    ERL+  + + E
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.5e-3252Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PELSSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE
        D NHITI+E +++   +  NQR+    RIRP ++R    ERL+  + + E
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVE

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein3.0e-3151.92Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TKQE+ K++  + +  LP+S TKDGFDP AYKL+AK GYDFTTH EFK L I  ++P+LSSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS
        D NHIT+ E +  K  +   QR  A  RI P ++R    ERL+  + + +D  STS
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS

A0A5A7UD46 Uncharacterized protein8.0e-3251.28Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TKQE+ K++  + +  LP+ RTKDGFDP AYKL+AKAGYDFTTH EFK L I  ++P+LSSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS
        D+NHIT+ E +  +  +  +QR  A  RI P ++R    E+L+  + + +D  STS
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS

A0A5D3BSG5 Uncharacterized protein3.6e-3251.92Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TKQE+ K++       LP+ RTKDGFDP AYKL+AKAGYDFTTH EFK L I  ++P+LSSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS
        D+NHIT+ E +  +  +  +QR  A  RI P ++R    ERL+  + + +D  STS
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS

A0A5D3C0W6 Ty3-gypsy retrotransposon protein4.0e-3151.28Show/hide
Query:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA
        +TKQE+ K++  + +  LP+ RTKD FDP AYKL+AKAGYDFTTH EFK L I  ++P+LSSTQKKL  +GH +  SR GLGYK  EP++ITRK K K+ 
Subjt:  MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVA

Query:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS
        D+NHIT+ E +  K  +  +QR  A  RI P ++R    ERL+  + + +D  STS
Subjt:  DTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.4e-3153.96Show/hide
Query:  LPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVK
        LP+ RTKDGFDP AYKL+AKAGYDFTTH +FK L I  ++P+LSSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV D+NHIT+ E +  +  +
Subjt:  LPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVK

Query:  NVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS
          NQR     RI P ++R    ERL+  + + +D  STS
Subjt:  NVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAGCAAGAAGTCGAAAAAGTTGAAGGTGGTCAGATGAACGTGATTCTACCTAAAAGTAGAACAAAAGATGGATTCGATCCAAATGCGTATAAACTCTTAGCAAA
GGCAGGTTATGACTTTACGACTCACAATGAGTTTAAGGGTCTAAGCATCCTTGACGACAAACCTGAGCTTTCATCAACACAGAAGAAACTTGCGAATAAGGGTCATCAAT
TACTTGCATCACGAAATGGTCTTGGATATAAGCCGCTAGAGCCAGTTCAAATAACGAGAAAATGGAAGTTGAAAGTTGCAGATACAAATCACATAACAATTGATGAATGT
GAAGATTCAAAAGGAGTGAAAAATGTCAATCAAAGGTTACCTGCACTCAGACGCATCAGACCACCAATTTCTCGAGTTTCAGCCCTTGAAAGATTGAACAAACCAAAAGA
AAAGGTAGAAGACACAACCTCAACTTCATATGTGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAGCAAGAAGTCGAAAAAGTTGAAGGTGGTCAGATGAACGTGATTCTACCTAAAAGTAGAACAAAAGATGGATTCGATCCAAATGCGTATAAACTCTTAGCAAA
GGCAGGTTATGACTTTACGACTCACAATGAGTTTAAGGGTCTAAGCATCCTTGACGACAAACCTGAGCTTTCATCAACACAGAAGAAACTTGCGAATAAGGGTCATCAAT
TACTTGCATCACGAAATGGTCTTGGATATAAGCCGCTAGAGCCAGTTCAAATAACGAGAAAATGGAAGTTGAAAGTTGCAGATACAAATCACATAACAATTGATGAATGT
GAAGATTCAAAAGGAGTGAAAAATGTCAATCAAAGGTTACCTGCACTCAGACGCATCAGACCACCAATTTCTCGAGTTTCAGCCCTTGAAAGATTGAACAAACCAAAAGA
AAAGGTAGAAGACACAACCTCAACTTCATATGTGACATGA
Protein sequenceShow/hide protein sequence
MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDEC
EDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTSYVT