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Sed0014781 (gene) of Chayote v1 genome

Gene IDSed0014781
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:38114947..38115596
RNA-Seq ExpressionSed0014781
SyntenySed0014781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607014.1 Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0650Show/hide
Query:  AATTVTVMVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLA--GNYRPQGSTGGAGFPSN
        AA    V  I+VLTL+ +   AAS SRSNFGNET   AP   CD  TE+CLVG   DDD+D S F SLA     R  G TG    P +
Subjt:  AATTVTVMVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLA--GNYRPQGSTGGAGFPSN

KAG6607070.1 hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia]9.9e-0537.89Show/hide
Query:  AATTVTVMVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRY
        AA     M + +L LSG+ C  AS + S++GN TV AA    CDG  E+C+  E++     +SAFPSL  +  P+  +      + P+C RPG Y
Subjt:  AATTVTVMVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRY

KAG6607071.1 hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia]4.9e-0436.84Show/hide
Query:  MVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRY-NCLGPK
        M + +L LSG+ C  AS + S++GN TV AA    CDG  E+C+  E +      SAFPSL  + R   S       +  +C RP  Y +C  P+
Subjt:  MVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRY-NCLGPK

KGN57814.1 hypothetical protein Csa_009509 [Cucumis sativus]6.9e-0639.34Show/hide
Query:  TAATTVTVMVILVL-TLSGNKCKAASSSRSNFGNETVTAAPLAS-CDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRYN-
        T  T V V +I+V+ T+  + CKAAS + SN GNET TAA  ++ C+ L ++CL+G  EDD+I+ SAFPSL    R              +C R GRY+ 
Subjt:  TAATTVTVMVILVL-TLSGNKCKAASSSRSNFGNETVTAAPLAS-CDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRYN-

Query:  --CLGPKPKIRPKETYSPYKRN
          CL P+ +  P +  S + R+
Subjt:  --CLGPKPKIRPKETYSPYKRN

TrEMBL top hitse value%identityAlignment
A0A0A0LA12 Uncharacterized protein3.3e-0639.34Show/hide
Query:  TAATTVTVMVILVL-TLSGNKCKAASSSRSNFGNETVTAAPLAS-CDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRYN-
        T  T V V +I+V+ T+  + CKAAS + SN GNET TAA  ++ C+ L ++CL+G  EDD+I+ SAFPSL    R              +C R GRY+ 
Subjt:  TAATTVTVMVILVL-TLSGNKCKAASSSRSNFGNETVTAAPLAS-CDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRYN-

Query:  --CLGPKPKIRPKETYSPYKRN
          CL P+ +  P +  S + R+
Subjt:  --CLGPKPKIRPKETYSPYKRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCAGCGACAACGGTGACGGTAATGGTGATTTTGGTTTTGACACTGAGTGGAAACAAGTGCAAGGCTGCTTCGTCAAGTCGTTCCAATTTCGGCAACGAGACCGT
CACTGCTGCACCATTGGCATCGTGTGACGGTCTCACCGAGCAATGCCTCGTCGGAGAGGAGGAGGACGACGACATTGACGACTCGGCTTTTCCAAGCCTTGCAGGCAATT
ATAGGCCCCAAGGCAGTACAGGAGGGGCTGGATTTCCCAGCAACCCAATATGTAGTCGGCCGGGAAGATATAACTGTCTTGGCCCCAAACCTAAGATCCGTCCAAAAGAA
ACTTATAGCCCATATAAGCGCAACTATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATAAAATAGGGTCAGATCACGGATTTCCTATTTCTTAAGCCTCCTTTCTTCTTCTTCTCTTTATCTTCTCCTGAGTTCTATTTTTATTGAACATACTTCAAGTTCAGTAC
TCACCAGAGCTGCAATGACGGCAGCGACAACGGTGACGGTAATGGTGATTTTGGTTTTGACACTGAGTGGAAACAAGTGCAAGGCTGCTTCGTCAAGTCGTTCCAATTTC
GGCAACGAGACCGTCACTGCTGCACCATTGGCATCGTGTGACGGTCTCACCGAGCAATGCCTCGTCGGAGAGGAGGAGGACGACGACATTGACGACTCGGCTTTTCCAAG
CCTTGCAGGCAATTATAGGCCCCAAGGCAGTACAGGAGGGGCTGGATTTCCCAGCAACCCAATATGTAGTCGGCCGGGAAGATATAACTGTCTTGGCCCCAAACCTAAGA
TCCGTCCAAAAGAAACTTATAGCCCATATAAGCGCAACTATTCATAATTTCCCACGGTAATTTGAGGCAACAACGATTGTGTCAAAATGTTATTTTTATTTGTTTTAGAA
ACCAAGCTTCTGTGACCGAGGATCGTGTAGTTGGTTATCTTGTCTAGAAGTTGTGCCCTCTATGCAGGGTTTGTTGGTCTCCCTCCCTCACTATGTATTC
Protein sequenceShow/hide protein sequence
MTAATTVTVMVILVLTLSGNKCKAASSSRSNFGNETVTAAPLASCDGLTEQCLVGEEEDDDIDDSAFPSLAGNYRPQGSTGGAGFPSNPICSRPGRYNCLGPKPKIRPKE
TYSPYKRNYS