; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0014788 (gene) of Chayote v1 genome

Gene IDSed0014788
OrganismSechium edule (Chayote v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationLG14:311809..313667
RNA-Seq ExpressionSed0014788
SyntenySed0014788
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027424.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-4364.88Show/hide
Query:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA
        MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMALVQ+LTGQDADFPDPS FHSS    G A P LL +  AA  
Subjt:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA

Query:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-------AAAVTCESYA
        D D+   NN+ P++LG ELP ED  + SFYDDFDDLI PPP+IGNFSG LP       AAAV  ESYA
Subjt:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-------AAAVTCESYA

XP_022931925.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.3e-4366.46Show/hide
Query:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA
        MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMALVQ+LTGQDADFPDPS FHSS    G A P LL +  AA  
Subjt:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA

Query:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA
        D D+   NN+ P++LG ELP ED  + SFYDDFDDLI PPP+IGNFSG LP   AAAV  ESYA
Subjt:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA

XP_022966643.1 uncharacterized protein LOC111466266 [Cucurbita maxima]2.1e-4164.24Show/hide
Query:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD
        MDGGGGG             RRKPTKKTKQPN K KPIKVVYISNPMKV+TSAS FMALVQ+LTGQDADFPDPS F SS  V G A P LL + AAA  +
Subjt:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD

Query:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA
          +   NN+ P++LG ELP ED  + SFYDDFDDLI PPP+IGNFSG LPAA  T      ESYA
Subjt:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA

XP_023518833.1 uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]5.0e-4365.45Show/hide
Query:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD
        MDGGGGG             RRKPTKKT QPN K KPIKVVYISNPMKV+TSASKFMALVQ+LTGQDADFPDPS FHSS    G    LL    AAAA D
Subjt:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD

Query:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-----AAAVTCESYA
         D+   NN+ P++LG ELP ED  L SFYDDFDDLI PPP+IGNFS  LP     AAAV  ESYA
Subjt:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-----AAAVTCESYA

XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]5.6e-4270.55Show/hide
Query:  HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDAN------NDSPSSLGA
        +RRKPTKKTKQPNKK KPIKVVYISNPMKVQTSASKFMALVQ+LTG+DADFPDPS F  SA   G A+  LL N A+   DD+        N++  SL  
Subjt:  HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDAN------NDSPSSLGA

Query:  ELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-AAAVTCESYAR
        ELP +D+ L SFYDDFDDLIFPPPVIGNFSGLLP AAAV  ESYAR
Subjt:  ELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-AAAVTCESYAR

TrEMBL top hitse value%identityAlignment
A0A0A0L3J8 VQ domain-containing protein2.6e-3766.67Show/hide
Query:  HRRKPTKKTKQP-NKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDAN-----NDSPSSLGA
        +RRKPTKKTKQP N+  KPIKVVYISNPMKVQTSAS FMALVQ+LTGQDADFPDPS F  SA   G A+   L N  ++  +DD       N + SSL  
Subjt:  HRRKPTKKTKQP-NKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDAN-----NDSPSSLGA

Query:  ELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPA--AAVTCESYAR
        E+P ED+ L SFYDDFDDLIFP PVIGNFSGLLPA  AAV  ES AR
Subjt:  ELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPA--AAVTCESYAR

A0A5A7SJV9 Sigma factor binding protein 21.4e-3564.19Show/hide
Query:  HRRKPTKKTKQPNKK-SKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDD------ANNDSPSSLG
        +RRKP KKTKQ NKK  KPIKVVYISNPMKVQTSAS+FMALVQ+LTGQDADFPDPS F  SA     A+   L N  +   DDD       N+++P SL 
Subjt:  HRRKPTKKTKQPNKK-SKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDD------ANNDSPSSLG

Query:  AELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPA--AAVTCESYAR
         ++P ED+ L SFYDDFDDLIFPPPV+GN SGLLP   AAV  ES AR
Subjt:  AELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPA--AAVTCESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like4.9e-3666.21Show/hide
Query:  GGHRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPT
        G HRRKPTKKTKQPN K+KPIKVVYISNPMKVQ SAS FMALVQQLTGQDADFPDPS F  +A     A P + +      AD +  N++  SL  E+P 
Subjt:  GGHRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPT

Query:  EDE-FLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC---ESYAR
        ED+ FL SFYDD DDLIFPPPVIGN+  LLPAAA T    ESYAR
Subjt:  EDE-FLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC---ESYAR

A0A6J1F0S9 sigma factor binding protein 1, chloroplastic-like1.1e-4366.46Show/hide
Query:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA
        MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMALVQ+LTGQDADFPDPS FHSS    G A P LL +  AA  
Subjt:  MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAA

Query:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA
        D D+   NN+ P++LG ELP ED  + SFYDDFDDLI PPP+IGNFSG LP   AAAV  ESYA
Subjt:  DDDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA

A0A6J1HSP6 uncharacterized protein LOC1114662661.0e-4164.24Show/hide
Query:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD
        MDGGGGG             RRKPTKKTKQPN K KPIKVVYISNPMKV+TSAS FMALVQ+LTGQDADFPDPS F SS  V G A P LL + AAA  +
Subjt:  MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAAD

Query:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA
          +   NN+ P++LG ELP ED  + SFYDDFDDLI PPP+IGNFSG LPAA  T      ESYA
Subjt:  DDA---NNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.3e-0656.6Show/hide
Query:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS
        R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQ+LTGQDA    PS
Subjt:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS

Q9LDH1 Sigma factor binding protein 1, chloroplastic4.6e-0741.58Show/hide
Query:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEF
        RK  K+ K+    +KPIKV YISNPM+VQT ASKF  LVQ+LTGQDA    P   +S ++     +P   +N A      +   +  S     L  ED F
Subjt:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEF

Query:  L
        L
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.6e-0756.6Show/hide
Query:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS
        R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQ+LTGQDA    PS
Subjt:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS

AT3G56710.1 sigma factor binding protein 13.3e-0841.58Show/hide
Query:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEF
        RK  K+ K+    +KPIKV YISNPM+VQT ASKF  LVQ+LTGQDA    P   +S ++     +P   +N A      +   +  S     L  ED F
Subjt:  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEF

Query:  L
        L
Subjt:  L


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCGGCGGCGGCGGCCACCGGCGAAAGCCCACCAAGAAAACAAAACAACCCAACAAAAAAAGCAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAGGT
TCAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAACAACTCACCGGCCAGGACGCCGACTTTCCCGACCCTTCTATGTTCCACTCCTCCGCCACCGTCTGCGGCTGCG
CCGCCCCCCTCCTCCTCGACAACCCGGCTGCCGCCGCCGCCGACGATGACGCCAATAACGACAGCCCTTCTTCACTTGGTGCCGAGCTGCCGACGGAGGATGAGTTTCTC
GATAGCTTTTATGATGACTTTGATGACCTGATTTTCCCTCCTCCGGTGATCGGAAACTTCTCCGGCTTACTTCCGGCCGCCGCGGTAACTTGTGAATCTTACGCAAGATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCGGCGGCGGCGGCCACCGGCGAAAGCCCACCAAGAAAACAAAACAACCCAACAAAAAAAGCAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAGGT
TCAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAACAACTCACCGGCCAGGACGCCGACTTTCCCGACCCTTCTATGTTCCACTCCTCCGCCACCGTCTGCGGCTGCG
CCGCCCCCCTCCTCCTCGACAACCCGGCTGCCGCCGCCGCCGACGATGACGCCAATAACGACAGCCCTTCTTCACTTGGTGCCGAGCTGCCGACGGAGGATGAGTTTCTC
GATAGCTTTTATGATGACTTTGATGACCTGATTTTCCCTCCTCCGGTGATCGGAAACTTCTCCGGCTTACTTCCGGCCGCCGCGGTAACTTGTGAATCTTACGCAAGATG
AAAAAGGACGTGTGTGCAAACAAAGACAGAAAATGGACCCGAACAGAACCTTTTATTTTCTTAGGCTAATCTCAGCAACTTGGGGAAAGGGTTGAAGTGAAATAGAAAAT
GACTCATAATCTCAGAACCAAACAAAGCCAGAAAGACCCTTTAAGTCAATGTATAAAGTTTATACATTTCAATTATTAGATACAAGTAGTACAC
Protein sequenceShow/hide protein sequence
MDGGGGGHRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEFL
DSFYDDFDDLIFPPPVIGNFSGLLPAAAVTCESYAR