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Sed0014810 (gene) of Chayote v1 genome

Gene IDSed0014810
OrganismSechium edule (Chayote v1)
DescriptionDNA ligase
Genome locationLG12:7335922..7336962
RNA-Seq ExpressionSed0014810
SyntenySed0014810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053852.1 hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa]1.4e-1767.06Show/hide
Query:  FLILFLSFSLL---HSSITVSTTRILKSKSD-FPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        F +LFL+FS L    SS  V TTRILKS  +  PS QA V +D RD E+  GDSFE LFEGR+ILENNDYPGTGANNHHDP SPA
Subjt:  FLILFLSFSLL---HSSITVSTTRILKSKSD-FPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

KAG6580910.1 hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia]2.1e-1865.52Show/hide
Query:  ALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        +L   R L+LFL FSLL SS+ V TTRI KS  D PSAQ  VFQD RD E +GGD F     GR +LENNDYPGTGANNHHDPN+PA
Subjt:  ALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

KAG6596972.1 hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia]4.2e-2265.31Show/hide
Query:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSF----ESLFEGRMILENNDYPGTGANNHHDPNSPAAKP
        M HK L  L FL+LFL+F+ L SS  V TTR+L+S  D PSAQ SVFQD RD E+SG DS     E L EGR++LENNDYPGTGANNHHDP SPA KP
Subjt:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSF----ESLFEGRMILENNDYPGTGANNHHDPNSPAAKP

KAG7017658.1 hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1865.52Show/hide
Query:  ALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        +L   R L+LFL FSLL SS+ V TTRI KS  D PSAQ  VFQD RD E +GGD F     GR++LENNDYPGTGANNHHDPN+PA
Subjt:  ALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

KGN59481.1 hypothetical protein Csa_001422 [Cucumis sativus]3.0e-2070.24Show/hide
Query:  FLILFLSFSLL---HSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        F +LFL+FS L   +SS+ V TTRILKS  D PS QA V QD RD E+  GDSFE LFEGR+ILENNDYPGTGANNHHDP SPA
Subjt:  FLILFLSFSLL---HSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

TrEMBL top hitse value%identityAlignment
A0A0A0LHJ0 Uncharacterized protein1.4e-2070.24Show/hide
Query:  FLILFLSFSLL---HSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        F +LFL+FS L   +SS+ V TTRILKS  D PS QA V QD RD E+  GDSFE LFEGR+ILENNDYPGTGANNHHDP SPA
Subjt:  FLILFLSFSLL---HSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

A0A5A7UDI6 Uncharacterized protein6.7e-1867.06Show/hide
Query:  FLILFLSFSLL---HSSITVSTTRILKSKSD-FPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA
        F +LFL+FS L    SS  V TTRILKS  +  PS QA V +D RD E+  GDSFE LFEGR+ILENNDYPGTGANNHHDP SPA
Subjt:  FLILFLSFSLL---HSSITVSTTRILKSKSD-FPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSPA

A0A5B6ZB32 Uncharacterized protein (Fragment)7.2e-1249Show/hide
Query:  ICVICFPRKQMAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP
        +C+ C     M HKA  FLR L+LFL F  + SS  V T+R LKS    P+AQ    Q   D    G    E   EGRM +E+NDYPGTGANNHHDP +P
Subjt:  ICVICFPRKQMAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP

A0A5J4ZL62 Uncharacterized protein6.1e-1151.11Show/hide
Query:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP
        M HKA  FLR L+LFL  S + S+  V T+R LKS  + P+AQ  + Q   D +  G        EGRM LE+NDYPGTGANNHHDP +P
Subjt:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP

A0A6A6KJS2 Uncharacterized protein1.4e-1051.06Show/hide
Query:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSA-QASVFQDARDF---EMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP
        M HK    +R L+LFL FS + SS+ V +TR LKS  + PS+ Q  + QDA D    E    D  E    GRM LEN DYPGTGANNHHDP +P
Subjt:  MAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSA-QASVFQDARDF---EMSGGDSFESLFEGRMILENNDYPGTGANNHHDPNSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCTCACATGGTGTTTTCTTGCCAAACAACTTTCCTTCATCTTTTTCTATAGATCTATCTGTGTAATTTGTTTCCCAAGAAAACAAATGGCTCACAAAGCTCTCTT
CTTCCTCAGATTTCTTATCCTCTTTCTCAGCTTCTCTCTTCTACATTCTTCCATTACTGTTTCCACCACAAGAATCCTCAAATCAAAATCTGATTTCCCATCTGCCCAAG
CTTCTGTTTTTCAGGATGCAAGAGATTTTGAGATGAGTGGTGGAGATTCATTTGAAAGTTTGTTTGAAGGAAGAATGATTTTGGAAAACAATGATTATCCTGGCACAGGA
GCAAACAATCACCATGATCCAAATTCTCCAGCTGCAAAACCATAG
mRNA sequenceShow/hide mRNA sequence
AATCAATGTCCCTCACATGGTGTTTTCTTGCCAAACAACTTTCCTTCATCTTTTTCTATAGATCTATCTGTGTAATTTGTTTCCCAAGAAAACAAATGGCTCACAAAGCT
CTCTTCTTCCTCAGATTTCTTATCCTCTTTCTCAGCTTCTCTCTTCTACATTCTTCCATTACTGTTTCCACCACAAGAATCCTCAAATCAAAATCTGATTTCCCATCTGC
CCAAGCTTCTGTTTTTCAGGATGCAAGAGATTTTGAGATGAGTGGTGGAGATTCATTTGAAAGTTTGTTTGAAGGAAGAATGATTTTGGAAAACAATGATTATCCTGGCA
CAGGAGCAAACAATCACCATGATCCAAATTCTCCAGCTGCAAAACCATAGTTTTGCGACCGATAACCATTTTGTTTTTAGTTTTCTTTTCGTGTGGAGTATTAGCTTGAA
TTTTGAAATAAAGAGGTCAAATTTTTTTAATTTGTTCTTTTTATTTTTCTAAATTTAGTTATGATTTCAAAGAAGGAATTGAAAACAAAATGGTTAAGGGATGATTTGTA
GAGAGAGAGGAAAAAAAAAGTGAGAAGTTAATTAGAAAATTGAAGGAACCAGAAGAAAAAAAAGGGGAAAAAATGAAAGAAAAAGCAAAGGGCAATTCCGTCTTCTTACT
TGGTTGCTTTTAGTCTTCTAATAAATTAGTTGTATGGTTCACTTGTCTGCAGGGAAAAAATTAGTGTTTGTTTGGAGTTTTTTAATTTGTAACATAAACAAGTCTTATGG
CATAATGATTGTGTATCATATACACCTTTCA
Protein sequenceShow/hide protein sequence
MSLTWCFLAKQLSFIFFYRSICVICFPRKQMAHKALFFLRFLILFLSFSLLHSSITVSTTRILKSKSDFPSAQASVFQDARDFEMSGGDSFESLFEGRMILENNDYPGTG
ANNHHDPNSPAAKP