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Sed0014812 (gene) of Chayote v1 genome

Gene IDSed0014812
OrganismSechium edule (Chayote v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationLG13:21911275..21913263
RNA-Seq ExpressionSed0014812
SyntenySed0014812
Gene Ontology termsNA
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH03567.1 hypothetical protein Prudu_014481 [Prunus dulcis]2.6e-0641.11Show/hide
Query:  MALDKHTGQTLYRGTSINGLYPIP-RFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYD--CTSYLDAKM
        M  D+ T   L +G S NGLYPIP   SS     K+  L  + +S +WH RLGHP+ +V++S LK  GL   N  S  +  C++ L  KM
Subjt:  MALDKHTGQTLYRGTSINGLYPIP-RFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYD--CTSYLDAKM

KAF7150679.1 hypothetical protein RHSIM_Rhsim02G0046600 [Rhododendron simsii]2.8e-0536.62Show/hide
Query:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLA---ANKESFMWHRRLGHPSPKVMRSSLKRIGLSLN
        DK+T Q LY+G    GLYP+  +S + + P +   A    N  + +WH +LGHPSP + +S +K+  L ++
Subjt:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLA---ANKESFMWHRRLGHPSPKVMRSSLKRIGLSLN

TQD93593.1 hypothetical protein C1H46_020801 [Malus baccata]1.7e-0535.29Show/hide
Query:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS
        DK T + LYRG S N +YP+P   SS   P    +     S +WH RLGHP+  V++++L +  +      S Y C + L  K +
Subjt:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS

XP_022158189.1 uncharacterized protein LOC111024722 [Momordica charantia]2.5e-1448.89Show/hide
Query:  DKHTGQTLYRGTSINGLYPIPRFSSSTA-----QPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS
        DK T  TLY+G S+NGLYPIP  S+ ++      PK   L A   S++WH RLGH SPK++R +L   GLS+++  +T  CTS L AKMS
Subjt:  DKHTGQTLYRGTSINGLYPIPRFSSSTA-----QPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS

XP_035817309.1 uncharacterized protein LOC100279596 isoform X1 [Zea mays]7.4e-0642.35Show/hide
Query:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKM
        D+ T +TL RG S NGLYP+P    S + P  LGL A   S  +WH+RLGHPS  ++ S L+   L+     S+  C S   AK+
Subjt:  DKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKM

TrEMBL top hitse value%identityAlignment
A0A2N9G2I0 Uncharacterized protein3.2e-0742.86Show/hide
Query:  DKHTGQTLYRGTSINGLYPI----PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVS
        D  +G+ LY+G S NGLYPI    P   ++TA P +L   ++K  + +WH RLGHPS +V+ S+L     SL++C+S
Subjt:  DKHTGQTLYRGTSINGLYPI----PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVS

A0A2N9I765 Integrase catalytic domain-containing protein1.5e-0744.74Show/hide
Query:  DKHTGQTLYRGTSINGLYPI---PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVS
        D H+G+ LY+G S NGLYPI   P  S +TA P +    ++K  + +WH RLGHPS +V+ S+L     SL++C+S
Subjt:  DKHTGQTLYRGTSINGLYPI---PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVS

A0A2N9IFR0 Uncharacterized protein9.5e-0737.37Show/hide
Query:  DKHTGQTLYRGTSINGLYPI---PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVST------YDCTSYLDAKMSTFFS
        D H+G+ +Y+G S NGLYPI   P  S +TA P +    +++  + +WH RLGHPS +V+ S+L     SL++C+S       + C   L A + T  S
Subjt:  DKHTGQTLYRGTSINGLYPI---PRFSSSTAQPKILGLAANKESF-MWHRRLGHPSPKVMRSSLKRIGLSLNNCVST------YDCTSYLDAKMSTFFS

A0A4Y1RI68 Integrase catalytic domain-containing protein1.2e-0641.11Show/hide
Query:  MALDKHTGQTLYRGTSINGLYPIP-RFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYD--CTSYLDAKM
        M  D+ T   L +G S NGLYPIP   SS     K+  L  + +S +WH RLGHP+ +V++S LK  GL   N  S  +  C++ L  KM
Subjt:  MALDKHTGQTLYRGTSINGLYPIP-RFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYD--CTSYLDAKM

A0A6J1DYN6 uncharacterized protein LOC1110247221.2e-1448.89Show/hide
Query:  DKHTGQTLYRGTSINGLYPIPRFSSSTA-----QPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS
        DK T  TLY+G S+NGLYPIP  S+ ++      PK   L A   S++WH RLGH SPK++R +L   GLS+++  +T  CTS L AKMS
Subjt:  DKHTGQTLYRGTSINGLYPIPRFSSSTA-----QPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTTGATAAACACACTGGACAAACCCTATATAGGGGCACAAGTATTAATGGTCTCTATCCAATTCCAAGATTTTCTTCGTCCACTGCACAACCAAAAATTTTGGG
CTTAGCAGCAAATAAGGAGTCTTTTATGTGGCATCGCCGGCTAGGGCATCCATCTCCAAAGGTTATGCGTAGTTCTTTAAAGCGCATAGGTCTGTCTTTAAATAATTGTG
TGTCCACTTACGACTGCACTAGCTATTTGGATGCAAAAATGTCAACTTTCTTTTCCATTGTCTCATTCTGTTTCCAATAA
mRNA sequenceShow/hide mRNA sequence
GCCTTTATAAATAGGCTAATTGTAATCCTTGAAAGATACGAGAAAAATATCATCCTGATTTGTATTTCTTGTTGGTATCAGAGCAGTAGACCCAAGCCTTTTTTTTTTCC
TCTAATGGCTTCCTCATCCTCTAGCCCTCTCAATACTGCTACATCAACCCCACACTATTTGCTATCAAATATTTGCAATCTTATTCCAATCCGACTTGATTCCACAAATT
ATATACAATAATGGAAGGTTCAAATTACTGCAATTTTTAAAGCTCATGCTTGTTTGGACACATTGATGGCACAATCATCCAACCCAGTGAAGAAAGTGCAGACTATTTAC
CATGGCAATACAGAGATCAAACATTGATAACATTAATCAATGCAACCTTGTCACCTTCAGCATTTTGTCATGTCACCTCTACAACCACAGCTAGTGAATTATGGGAATCA
TTGAAATCCAGGTACTCTTCAAAATCACGTTCTAATATTTTGGCCTTACGATCTGCTTTATATACTGTTCAGAAACTGCATTCTGAGACCGTTGACCAATTTTCAAGACT
AGTAAAGGATATTGTTGACAAATTGGCTGCTGCATCTGTTACTATTGATGATGAAGAAACATTGCTTCACATCTTAAATGGTCTCCCATCTGAATATGGACCCTTCAGAA
CGTCAATACGAACTAGGAACACCCCAATTACCTTGGGAGAACTCGAAGTATTGCTCGATGCAGAAGAAAAATGTATAAACAAATCCGTACCCACTGTCGAAATCACCCCT
ACCGCAATGGCGGCGATGTCTAGCCTCAACTTCACCAATGGAGGTGGAAACAACCATAGATCTGACAACTAGCGGGGGTTCTCAGGCGTTGGCAGTGCAAATCCTAGGGC
AAATAAATTCCAATCTCGCGGCTCTGGACGTACAAATGGGAATTTAACATCTTGGGGCTCCAATCGGAATTCACACCAAAATAATTCTGGTCATTTCCAAAATGGATCTC
ATTTCCAACCTGCAACAAATAGGCCATTTCATAATGGCCCACCACAACAACATACTAATTTTTCAGTTGGGCCACCATACAATAATGGCTCTAATTTCTATTATGGAAAT
AGCTCTAATAATTCTTTTGGTTCTTATAGACAGCCCAATCAATATCAAGCGGCCAACCGTGAAAATAATGGAGGTCGTATTTTATGCCAGATATGCAACAAATCCGGTCA
TACTGCATTAGACTGCTATCATCGAATGAATTTTGCTTTTCAGGGTCACCATCCTCCTGCTCAGTTAGCTGCCATGGCTGCAAATAATATGTCTCACTCTGATGGGTACT
GGCTCTCTGACAGTGGTTGCAACACACACTTAACCAATGACTTGACCAATCTCGAAAATTCCACCCCATATAATGGTGAAGAATCAGTTACGGTGGGAAATGGACATCCT
CTAAACATTAAACACAATGGCTCTTGATAAACACACTGGACAAACCCTATATAGGGGCACAAGTATTAATGGTCTCTATCCAATTCCAAGATTTTCTTCGTCCACTGCAC
AACCAAAAATTTTGGGCTTAGCAGCAAATAAGGAGTCTTTTATGTGGCATCGCCGGCTAGGGCATCCATCTCCAAAGGTTATGCGTAGTTCTTTAAAGCGCATAGGTCTG
TCTTTAAATAATTGTGTGTCCACTTACGACTGCACTAGCTATTTGGATGCAAAAATGTCAACTTTCTTTTCCATTGTCTCATTCTGTTTCCAATAATCCCTTGGAATTAA
TTCATAGTGATGTATGAGGACCATCTCCAATTGTTGCAAATAACAATTTTCGTTACTATGTGAGCTTTATCGATGATTACAGC
Protein sequenceShow/hide protein sequence
MALDKHTGQTLYRGTSINGLYPIPRFSSSTAQPKILGLAANKESFMWHRRLGHPSPKVMRSSLKRIGLSLNNCVSTYDCTSYLDAKMSTFFSIVSFCFQ