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Sed0014861 (gene) of Chayote v1 genome

Gene IDSed0014861
OrganismSechium edule (Chayote v1)
DescriptionHistone deacetylase complex subunit like
Genome locationLG12:209116..209798
RNA-Seq ExpressionSed0014861
SyntenySed0014861
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597027.1 hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia]4.3e-2659.5Show/hide
Query:  MDVHH----PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAAT
        M  HH    P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY E T EAI+ CDWCR         GRRGS  RK+ +    +S +DK++ NS   
Subjt:  MDVHH----PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAAT

Query:  ATVPSPRPAPRRYKLLKDVMC
          +PSPR APRRYKLLKDVMC
Subjt:  ATVPSPRPAPRRYKLLKDVMC

KAG7028505.1 hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-2659.66Show/hide
Query:  MDVHH--PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATAT
        M  HH  P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY E   EAI+ CDWCR         GRRGS  RK+ +    +S +DK++ NS     
Subjt:  MDVHH--PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATAT

Query:  VPSPRPAPRRYKLLKDVMC
        +PSPR APRRYKLLKDVMC
Subjt:  VPSPRPAPRRYKLLKDVMC

XP_022974249.1 uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]1.8e-2460.18Show/hide
Query:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLV--HAAASHKDKQQTNSAATATVPSPRP
        P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY ES  EAI++CDWCR         GRRGS  +   V     +S +DK++ NS     +PSPR 
Subjt:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLV--HAAASHKDKQQTNSAATATVPSPRP

Query:  APRRYKLLKDVMC
        APRRYKLLKDVMC
Subjt:  APRRYKLLKDVMC

XP_022974251.1 uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]1.6e-2561.61Show/hide
Query:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVPSPRPA
        P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY ES  EAI++CDWCR         GRRGS  RK  +    +S +DK++ NS     +PSPR A
Subjt:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

XP_023540879.1 uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]2.3e-2760.68Show/hide
Query:  MDVHHPAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVP
        M  HHP P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY E   EAI++CDWCR         GRRGS  RK+ +    +S +DK++ NS     +P
Subjt:  MDVHHPAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVP

Query:  SPRPAPRRYKLLKDVMC
        SPR APRRYKLLKDVMC
Subjt:  SPRPAPRRYKLLKDVMC

TrEMBL top hitse value%identityAlignment
A0A1S3AVF1 uncharacterized protein LOC1034831221.6e-2158.56Show/hide
Query:  PAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYR-ESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTN-SAATATVPSPRPAP
        P +CCLCGDVGFPANLFRCT C++RFQH   SNYY  ES    I++CDWCRS E +T    RR +   TT      S KD++ T   ++ A +PSPRPAP
Subjt:  PAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYR-ESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTN-SAATATVPSPRPAP

Query:  RRYKLLKDVMC
        RRYKLLKDVMC
Subjt:  RRYKLLKDVMC

A0A5D3DB67 Uncharacterized protein1.6e-2158.56Show/hide
Query:  PAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYR-ESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTN-SAATATVPSPRPAP
        P +CCLCGDVGFPANLFRCT C++RFQH   SNYY  ES    I++CDWCRS E +T    RR +   TT      S KD++ T   ++ A +PSPRPAP
Subjt:  PAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYR-ESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTN-SAATATVPSPRPAP

Query:  RRYKLLKDVMC
        RRYKLLKDVMC
Subjt:  RRYKLLKDVMC

A0A6J1ED69 uncharacterized protein LOC1114321091.5e-1952.14Show/hide
Query:  MDVHHPAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYY-RESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTNSAATATVP
        MD++ P   +CCLCGDVGFPA LFRC  C++RFQH   SN+Y  ES     ++CDWCR TEH T       +    T            +T S+AT  VP
Subjt:  MDVHHPAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYY-RESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTNSAATATVP

Query:  SPRPAPRRYKLLKDVMC
        SPRPAPRRYKLLKDVMC
Subjt:  SPRPAPRRYKLLKDVMC

A0A6J1IAU2 uncharacterized protein LOC111472884 isoform X27.9e-2661.61Show/hide
Query:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVPSPRPA
        P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY ES  EAI++CDWCR         GRRGS  RK  +    +S +DK++ NS     +PSPR A
Subjt:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGS-VRKTTLVHAAASHKDKQQTNSAATATVPSPRPA

Query:  PRRYKLLKDVMC
        PRRYKLLKDVMC
Subjt:  PRRYKLLKDVMC

A0A6J1IH20 uncharacterized protein LOC111472884 isoform X18.8e-2560.18Show/hide
Query:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLV--HAAASHKDKQQTNSAATATVPSPRP
        P P VCCLCGDVGFPANLFRCT C+HRFQH   SNYY ES  EAI++CDWCR         GRRGS  +   V     +S +DK++ NS     +PSPR 
Subjt:  PAPAVCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLV--HAAASHKDKQQTNSAATATVPSPRP

Query:  APRRYKLLKDVMC
        APRRYKLLKDVMC
Subjt:  APRRYKLLKDVMC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02070.1 unknown protein1.1e-1439.53Show/hide
Query:  VCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRG---SVRKTTLV----------HAAASHKDKQQTN-----
        VCC+CGDVGF   LF C  C  RFQH   SNYY +   E  ++CDWCRS + K +   R G   S + ++ V            +  H+ K   N     
Subjt:  VCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRG---SVRKTTLV----------HAAASHKDKQQTN-----

Query:  ----SAATATVPSPRPAPRRYKLLKDVMC
            +     V SP+ A RRYKLLKDVMC
Subjt:  ----SAATATVPSPRPAPRRYKLLKDVMC

AT3G60520.1 unknown protein5.5e-1944.35Show/hide
Query:  VCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRG-----SVRKTTLVHAAASHKDKQQTNSAATAT-------
        VCC+CGDVGF   LF C+ C +RFQH   S+YY+E   + I++CDWC+  E K+ T  + G     S R     +++  H+ KQQ  +  T++       
Subjt:  VCCLCGDVGFPANLFRCTTCTHRFQH---SNYYRESTMEAIQMCDWCRSTEHKTATAGRRG-----SVRKTTLVHAAASHKDKQQTNSAATAT-------

Query:  -----VPSPRPAPRRYKLLKDVMC
             VPSPRPA RRYKLLKDVMC
Subjt:  -----VPSPRPAPRRYKLLKDVMC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTCATCATCCCGCCCCCGCCGTCTGTTGCCTCTGCGGCGACGTTGGTTTTCCGGCCAACCTCTTCCGCTGCACCACCTGCACCCATCGTTTCCAACACTCTAA
CTACTACAGGGAATCGACCATGGAGGCGATTCAAATGTGCGATTGGTGCAGATCAACTGAACACAAAACCGCTACTGCTGGCCGCCGTGGCTCTGTAAGAAAGACCACCT
TAGTTCATGCCGCCGCGTCCCACAAGGACAAACAACAAACAAACTCCGCCGCCACTGCCACCGTGCCTTCTCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTGAAGGAT
GTTATGTGTTGA
mRNA sequenceShow/hide mRNA sequence
GGTACATACGTGTGGAGAGAAAAAGAAGGAAAATCCAAAAAGAAATAAATGAGAAATGGAAAGTAGAGACATAAGGCATTCCGCGTGTACGTTACACATCGAGAAAAGGA
AGTCGGCAAAGGAAGACAAGTGAGAAGTGAAGCAGTTGAGGCTGTCAAAAACTCCATCCCCATACATATGCATACAAGGTCCACACGCTCATTATTCTCTTTAATCCCCT
TCCACGGCCGTTCCCCCCATCCATGGATGTTCATCATCCCGCCCCCGCCGTCTGTTGCCTCTGCGGCGACGTTGGTTTTCCGGCCAACCTCTTCCGCTGCACCACCTGCA
CCCATCGTTTCCAACACTCTAACTACTACAGGGAATCGACCATGGAGGCGATTCAAATGTGCGATTGGTGCAGATCAACTGAACACAAAACCGCTACTGCTGGCCGCCGT
GGCTCTGTAAGAAAGACCACCTTAGTTCATGCCGCCGCGTCCCACAAGGACAAACAACAAACAAACTCCGCCGCCACTGCCACCGTGCCTTCTCCTCGCCCTGCTCCACG
CCGCTACAAGCTTCTGAAGGATGTTATGTGTTGA
Protein sequenceShow/hide protein sequence
MDVHHPAPAVCCLCGDVGFPANLFRCTTCTHRFQHSNYYRESTMEAIQMCDWCRSTEHKTATAGRRGSVRKTTLVHAAASHKDKQQTNSAATATVPSPRPAPRRYKLLKD
VMC