CuGenDBv2

Gene ID	Sed0014912
Organism	Sechium edule (Chayote v1)
Description	B3 domain-containing protein
Genome location	LG14:6919055..6919684
RNA-Seq Expression	Sed0014912
Synteny	Sed0014912
Gene Ontology terms	GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR005508 - B3 domain-containing protein At2g31720-like IPR015300 - DNA-binding pseudobarrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK08431.1 B3 domain-containing protein [Cucumis melo var. makuwa]

8.3e-23

39.44

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Query:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL
        +R+REK LKRP+      P P  D+                   D NQE   +      +E+ ++  E IP++YK+ M FMG   G W     LV EKRL
Subjt:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL

Query:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH
        + GD+EE   RL+IP R  R  FL   +EE L  +    VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR   G    
Subjt:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH

Query:  LCFTILLIAEEDR
        LCF +LL  EE+R
Subjt:  LCFTILLIAEEDR

XP_004147556.1 B3 domain-containing protein At2g31420 [Cucumis sativus]

1.1e-22

43.6

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Query:  DPSDDDDGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRL
        +   D D NQE  +++     +E+ K   E IPD+YK  M FMG   G W     LV EKRL+ GD+EE   RL+IP R  R  FL   +EE L R+   
Subjt:  DPSDDDDGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRL

Query:  KVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAE
         VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR A G+   LCF +L + E
Subjt:  KVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAE

XP_008441972.1 PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo]

8.3e-23

39.44

Show/hide

Query:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL
        +R+REK LKRP+      P P  D+                   D NQE   +      +E+ ++  E IP++YK+ M FMG   G W     LV EKRL
Subjt:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL

Query:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH
        + GD+EE   RL+IP R  R  FL   +EE L  +    VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR   G    
Subjt:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH

Query:  LCFTILLIAEEDR
        LCF +LL  EE+R
Subjt:  LCFTILLIAEEDR

XP_022978264.1 uncharacterized protein LOC111478299 [Cucurbita maxima]

1.3e-23

45.64

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Query:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA
        E  + LA+G+  DYK  M FMG    S P  + +KRL+ GD++E   RLVIP R +R  FL   +EE L  E+   VE+++P  +VSL+ L+  +  + A
Subjt:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA

Query:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAEED
        A   IT+W+G+VERN+L EGDLI+LW FRV  G+   LCF +L I E D
Subjt:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAEED

XP_023544949.1 B3 domain-containing protein At2g31420-like [Cucurbita pepo subsp. pepo]

1.1e-22

44.44

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Query:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA
        E  + L +G+P DYK  M FMG    S P  + +KRL+ GD++E   RLVIP R +R  FL   +EE L  E+   VE+++P  +VSL+ L+  +  + A
Subjt:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA

Query:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGE-----FSHLCFTILLIAEE
        A   IT+W+G+VERN+L EGDL++LW FRV  GE        LCF +L I EE
Subjt:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGE-----FSHLCFTILLIAEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L012 Uncharacterized protein

5.2e-23

43.6

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Query:  DPSDDDDGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRL
        +   D D NQE  +++     +E+ K   E IPD+YK  M FMG   G W     LV EKRL+ GD+EE   RL+IP R  R  FL   +EE L R+   
Subjt:  DPSDDDDGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRL

Query:  KVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAE
         VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR A G+   LCF +L + E
Subjt:  KVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAE

A0A1S3B4L2 B3 domain-containing protein At2g31420-like

4.0e-23

39.44

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Query:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL
        +R+REK LKRP+      P P  D+                   D NQE   +      +E+ ++  E IP++YK+ M FMG   G W     LV EKRL
Subjt:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL

Query:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH
        + GD+EE   RL+IP R  R  FL   +EE L  +    VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR   G    
Subjt:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH

Query:  LCFTILLIAEEDR
        LCF +LL  EE+R
Subjt:  LCFTILLIAEEDR

A0A5A7SSE3 B3 domain-containing protein

4.0e-23

39.44

Show/hide

Query:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL
        +R+REK LKRP+      P P  D+                   D NQE   +      +E+ ++  E IP++YK+ M FMG   G W     LV EKRL
Subjt:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL

Query:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH
        + GD+EE   RL+IP R  R  FL   +EE L  +    VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR   G    
Subjt:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH

Query:  LCFTILLIAEEDR
        LCF +LL  EE+R
Subjt:  LCFTILLIAEEDR

A0A5D3C998 B3 domain-containing protein

4.0e-23

39.44

Show/hide

Query:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL
        +R+REK LKRP+      P P  D+                   D NQE   +      +E+ ++  E IP++YK+ M FMG   G W     LV EKRL
Subjt:  RRNREKALKRPML-----PDPSDDD-------------------DGNQEPEMYK-----LETHKKLAEGIPDDYKRKMNFMGLKSGPW-----LVAEKRL

Query:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH
        + GD+EE   RL+IP R  R  FL   +EE L  +    VEI++P  TVSL+ L+  +     A  +IT+W+G+VERN L EGDL++LW FR   G    
Subjt:  ETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSH

Query:  LCFTILLIAEEDR
        LCF +LL  EE+R
Subjt:  LCFTILLIAEEDR

A0A6J1ITM1 uncharacterized protein LOC111478299

6.2e-24

45.64

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Query:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA
        E  + LA+G+  DYK  M FMG    S P  + +KRL+ GD++E   RLVIP R +R  FL   +EE L  E+   VE+++P  +VSL+ L+  +  + A
Subjt:  ETHKKLAEGIPDDYKRKMNFMGL--KSGPWLVAEKRLETGDLEE---RLVIPARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATA

Query:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAEED
        A   IT+W+G+VERN+L EGDLI+LW FRV  G+   LCF +L I E D
Subjt:  AAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAEED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05920.1 Domain of unknown function (DUF313)

7.0e-04

28.47

Show/hide

Query:  MNFMGLKSGPWLVAEKRLETGDL---EERLVIPARTVRCKFLSAMDEEVLKREKRLKVE--------IVDPSNTVSLVA-----LTVEKAAATAAAYVIT
        M+ M     P L+ EK L++ D+   + RL IP  TV       +DE  L  E  +  E        +VD       +      +T +  ++  +  +  
Subjt:  MNFMGLKSGPWLVAEKRLETGDL---EERLVIPARTVRCKFLSAMDEEVLKREKRLKVE--------IVDPSNTVSLVA-----LTVEKAAATAAAYVIT

Query:  DWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTIL
        +WS +VE N L EGD I LW FR        LCF ++
Subjt:  DWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTIL

Sequences

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CDS sequence

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ATGGAGGCAAACAGTACGAACTCTGCATCTCCGGCCGCCGTGGAATCAACCGGCGAAGACGATCCAGTATCGGCGGGGAACAAGATTGAAATCGCAGAGAGAAGAAACAG
AGAAAAAGCCCTTAAACGCCCAATGTTGCCCGATCCGAGCGACGACGACGACGGAAATCAAGAACCAGAAATGTACAAATTGGAAACCCACAAAAAATTAGCGGAGGGGA
TCCCGGATGATTACAAGAGAAAGATGAATTTCATGGGATTGAAATCGGGGCCGTGGTTGGTGGCGGAGAAGCGACTGGAAACGGGCGATTTGGAGGAGCGGCTAGTGATT
CCGGCGAGGACGGTCCGGTGTAAGTTTCTGAGCGCGATGGATGAGGAGGTGCTGAAACGGGAGAAACGGTTGAAGGTGGAGATTGTTGATCCGAGTAACACGGTGAGTTT
GGTGGCGCTGACGGTGGAGAAAGCAGCGGCGACGGCGGCGGCGTATGTGATTACTGACTGGAGTGGAATTGTGGAGAGGAACAAGCTGGGGGAAGGTGACTTGATCGAGC
TGTGGTGTTTTCGTGTCGCCGCCGGCGAGTTCTCCCACCTCTGTTTCACGATTTTACTCATCGCTGAAGAAGATCGCTGA

mRNA sequence

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Protein sequence

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MEANSTNSASPAAVESTGEDDPVSAGNKIEIAERRNREKALKRPMLPDPSDDDDGNQEPEMYKLETHKKLAEGIPDDYKRKMNFMGLKSGPWLVAEKRLETGDLEERLVI
PARTVRCKFLSAMDEEVLKREKRLKVEIVDPSNTVSLVALTVEKAAATAAAYVITDWSGIVERNKLGEGDLIELWCFRVAAGEFSHLCFTILLIAEEDR

Sed0014912 (gene) of Chayote v1 genome