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Sed0014928 (gene) of Chayote v1 genome

Gene IDSed0014928
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 1-like
Genome locationLG05:5343509..5344625
RNA-Seq ExpressionSed0014928
SyntenySed0014928
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042689.1 uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa]9.1e-1059.52Show/hide
Query:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEG
        MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H + D HCK +GS KKKEH+ KKEG
Subjt:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEG

XP_008437383.1 PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo]1.1e-2064.55Show/hide
Query:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-
        MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H + D HCK +GS KKKEH+ KKEGGLLHKIKEAFSDHSS 
Subjt:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-

Query:  SDSSDDECHK
        S  S++ECHK
Subjt:  SDSSDDECHK

XP_022146004.1 uncharacterized protein LOC111015315 [Momordica charantia]8.5e-1656.19Show/hide
Query:  MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSD
        MAS QC KPA   QH +  +H Q HCFGHVSDKIKG+F+GH HHGQ P A  H           +   K+KE  K K+G LLHKIK+AFSDHSS S  SD
Subjt:  MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSD

Query:  DECHK
        +E HK
Subjt:  DECHK

XP_022958513.1 glycine-rich cell wall structural protein 1-like [Cucurbita moschata]2.6e-0441.41Show/hide
Query:  PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN
        PA    H +   H      GH          GH     P V H  P   +  GHCKA GS+KK H K KEGG L+KIK+AFSDHS +  SDD+C + ++
Subjt:  PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN

XP_038875375.1 uncharacterized protein LOC120067846 [Benincasa hispida]1.5e-2062.83Show/hide
Query:  MASQQCCKPAQPSQHQKPDQHQQDHCF-GHVSDKIKGIFQGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-SDSS
        MAS QC KPA   Q QK DQ Q  HCF GHVSDKIKG+F+GHHHGQ P+A     H +   HCK  GS KKKEH K KEGGLLHKIK+AFSDHSS S  S
Subjt:  MASQQCCKPAQPSQHQKPDQHQQDHCF-GHVSDKIKGIFQGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-SDSS

Query:  DDEC----HKRKN
        ++EC    H +KN
Subjt:  DDEC----HKRKN

TrEMBL top hitse value%identityAlignment
A0A1S3AUH3 uncharacterized protein LOC1034828155.5e-2164.55Show/hide
Query:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-
        MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H + D HCK +GS KKKEH+ KKEGGLLHKIKEAFSDHSS 
Subjt:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-

Query:  SDSSDDECHK
        S  S++ECHK
Subjt:  SDSSDDECHK

A0A5A7TMV4 Uncharacterized protein4.4e-1059.52Show/hide
Query:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEG
        MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H + D HCK +GS KKKEH+ KKEG
Subjt:  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGHGSADGHCKAAGS-KKKEHRKKKEG

A0A6J1CWW2 uncharacterized protein LOC1110153154.1e-1656.19Show/hide
Query:  MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSD
        MAS QC KPA   QH +  +H Q HCFGHVSDKIKG+F+GH HHGQ P A  H           +   K+KE  K K+G LLHKIK+AFSDHSS S  SD
Subjt:  MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSD

Query:  DECHK
        +E HK
Subjt:  DECHK

A0A6J1H399 glycine-rich cell wall structural protein 1-like1.2e-0441.41Show/hide
Query:  PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN
        PA    H +   H      GH          GH     P V H  P   +  GHCKA GS+KK H K KEGG L+KIK+AFSDHS +  SDD+C + ++
Subjt:  PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTCAGCAATGCTGCAAACCAGCTCAGCCCAGCCAGCACCAGAAGCCTGACCAACACCAACAAGACCACTGCTTCGGCCACGTGTCCGACAAGATTAAAGGCAT
CTTCCAAGGCCACCATCACGGCCAAGGTCCGGTGGCGCACGGCCATCCGGGCCATGGCAGTGCCGATGGCCACTGCAAGGCTGCCGGGTCGAAGAAGAAGGAACATCGCA
AAAAGAAAGAAGGGGGTTTGCTGCACAAGATTAAGGAGGCCTTCTCGGACCACAGCAGCAGTGATAGCAGTGACGATGAGTGTCACAAAAGGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAAAAAAAAGTTAAAAAAACAAAAGCTCCAATTTTGCATCCATGGCCTCTCAGCAATGCTGCAAACCAGCTCAGCCCAGCCAGCACCAGAAGCCTGAC
CAACACCAACAAGACCACTGCTTCGGCCACGTGTCCGACAAGATTAAAGGCATCTTCCAAGGCCACCATCACGGCCAAGGTCCGGTGGCGCACGGCCATCCGGGCCATGG
CAGTGCCGATGGCCACTGCAAGGCTGCCGGGTCGAAGAAGAAGGAACATCGCAAAAAGAAAGAAGGGGGTTTGCTGCACAAGATTAAGGAGGCCTTCTCGGACCACAGCA
GCAGTGATAGCAGTGACGATGAGTGTCACAAAAGGAAGAACTGAAAGGAGGAAGAAGGTTACTAGATTGAAGGGAATGAGATAATGCCTTCAAACTACAACTACTAAAGA
ATTTAGTGACCAAAAGTAAAGATCTATCATGTGGGATAAATAAGACAATTTATGACACCCTTACTTTATCTACTTTGTGTTTCAAATAAACTTTTGTACACTATCTTTGT
TACTGACATAATATAGAGCCAAATTATGCATGTCATTATGCATTTATTTTTTTCTTCAAGGAAATATTACATAACATGGATCCTAAAAATTGTTTAAAACAGAGTTGCTC
CTGAACGGAGGATAAGCTTTTTGGATGTGTTTGAACCCCCGTTTATGTAAATGGCTGAATTGATTATAATAACACAACCGATATTTGCCCCACTA
Protein sequenceShow/hide protein sequence
MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN