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Sed0014961 (gene) of Chayote v1 genome

Gene IDSed0014961
OrganismSechium edule (Chayote v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationLG01:65959746..65960867
RNA-Seq ExpressionSed0014961
SyntenySed0014961
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5480290.1 hypothetical protein F2P56_001052, partial [Juglans regia]1.4e-1038.1Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE
        M DS+ EL S AAS++LFIF   N I++ V+    +  P+ D   +D++PVS++I  NT+T QK   +     D  E++   NE   +++      D  E
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE

Query:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
        + + +H++   +++SED ++ RRRVEEFI+KVN GW+EE   + RLV
Subjt:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]7.1e-4270.07Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES
        MADSI ELA+EAASSTLFIF +FN I+LI+LFTS+    SSDHQN DD+P+SIVIHSNTN +Q FM QKN  VDVC VTETLNEP+        D+VE S
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES

Query:  SDNHEDEEES----EDEEDFRRRVEEFIDKVNSGWREERQRTLRLVE
         D+HEDE+E     EDEEDF+RRVEEFI+KVNSGWREERQRT RLVE
Subjt:  SDNHEDEEES----EDEEDFRRRVEEFIDKVNSGWREERQRTLRLVE

XP_018815821.1 uncharacterized protein LOC108987375 [Juglans regia]5.5e-1038.13Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE
        M DS+ EL S AAS++LFIF   N I++ V+    +  P+ D   +D++PVS++I  NT+T QK   +     D  E++   NE   +++      D  E
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE

Query:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREE
        + + +H++   +++SED ++ RRRVEEFI+KVN GW+EE
Subjt:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREE

XP_030950213.1 uncharacterized protein LOC115974139 [Quercus lobata]3.0e-0836.62Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES
        M DS+ EL ++AAS++LFIF   N I+ I+L  SK    SS+     ++P+S+VI+++TN +Q    ++    D  ++   ++E +        D  E  
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES

Query:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
        +  H  +EE +D+++ RRRVEEFI+KVN  W+ E  R+ RLV
Subjt:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]2.3e-3261.22Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDD-DMPVSIVIHSNTN-TEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVE
        MADSI ELA++A SSTLFIF  FN I+L++ FTS+    S D QNDD DMP+SIVIHS TN TEQ  M QK+  V VCEV E+ NE     NFNC   VE
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDD-DMPVSIVIHSNTN-TEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVE

Query:  ESSDNHED--EEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLVE
        +S D++ED  E+E EDE+DFR+RVEEFI+KVN GWREER RT   V+
Subjt:  ESSDNHED--EEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLVE

TrEMBL top hitse value%identityAlignment
A0A2I4E8V2 uncharacterized protein LOC1089873752.7e-1038.13Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE
        M DS+ EL S AAS++LFIF   N I++ V+    +  P+ D   +D++PVS++I  NT+T QK   +     D  E++   NE   +++      D  E
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNE--PNMRNNFNCGDTVE

Query:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREE
        + + +H++   +++SED ++ RRRVEEFI+KVN GW+EE
Subjt:  ESSDNHED---EEESEDEEDFRRRVEEFIDKVNSGWREE

A0A2N9GM45 Uncharacterized protein1.2e-1039.44Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES
        M DS+ EL ++AAS++LFIF   N I+ I+L  SK    SSD     ++P+S+VI  NT+T  K +          ++    +E +  +     D  EES
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES

Query:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
         +N+  ++E ED+++ RRRVEEFI+KVN GW+ E  R+ RLV
Subjt:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

A0A4S4ENT7 Uncharacterized protein5.5e-0835.42Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNT--EQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVE
        M DS  EL + AAS++L +F   N I+ I+L    +  P S+   +  +P  IV H N N+  E +      +  +   +   L+      +   GD  E
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNT--EQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVE

Query:  ESSDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
        E  +  E+EEE +D+++ RRRVEEFIDK+N GW+ E+ RT  LV
Subjt:  ESSDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

A0A6P6G1P3 uncharacterized protein LOC1124911009.5e-0834.51Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES
        M DS ++L ++ AS++LF+F   N I++I+L  SK  + + D +N   +P+S+    +T+  Q        T+D  +V E ++E +          V  +
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES

Query:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
           +++EEE+ED+++ RRRVEEFI+KVN GW+ E   T +LV
Subjt:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

A0A7N2QYC4 Uncharacterized protein1.5e-0836.62Show/hide
Query:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES
        M DS+ EL ++AAS++LFIF   N I+ I+L  SK    SS+     ++P+S+VI+++TN +Q    ++    D  ++   ++E +        D  E  
Subjt:  MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEES

Query:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV
        +  H  +EE +D+++ RRRVEEFI+KVN  W+ E  R+ RLV
Subjt:  SDNHEDEEESEDEEDFRRRVEEFIDKVNSGWREERQRTLRLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATTCCATTTTTGAACTTGCTTCTGAAGCAGCTTCCAGCACTCTGTTCATCTTTTTCGTCTTCAATTTCATCGTTCTCATCGTTCTCTTCACATCAAAGCGAGA
GCTTCCCAGTTCTGATCACCAAAATGATGATGATATGCCTGTTTCAATTGTCATTCACAGCAACACAAATACAGAACAGAAGTTCATGTTTCAGAAAAATGACACAGTTG
ATGTGTGCGAAGTGACAGAGACCCTAAATGAACCAAATATGCGTAACAACTTCAACTGCGGTGACACTGTTGAAGAGAGCAGTGATAATCACGAGGACGAGGAGGAGAGC
GAGGACGAGGAGGATTTCCGAAGAAGAGTGGAAGAATTTATCGACAAGGTTAATAGTGGGTGGAGAGAAGAAAGGCAAAGAACCTTGAGATTGGTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
AACATGTGAGTGTTTGACTAACTTTAAAAAAATATTCAAGTTTCTTTCACAACTCATAATTGGTCTGCTTCTCCAACAAACAGCTTCTTCATCACACTTCCCATATCACC
AAACCCTTTAAATACCCAAAGCCCAACCATCTCTCTTGTTCCAATTCACAATTCTAAGTTTTAACCAAAATTTGCACTAAAACCATGGCTGATTCCATTTTTGAACTTGC
TTCTGAAGCAGCTTCCAGCACTCTGTTCATCTTTTTCGTCTTCAATTTCATCGTTCTCATCGTTCTCTTCACATCAAAGCGAGAGCTTCCCAGTTCTGATCACCAAAATG
ATGATGATATGCCTGTTTCAATTGTCATTCACAGCAACACAAATACAGAACAGAAGTTCATGTTTCAGAAAAATGACACAGTTGATGTGTGCGAAGTGACAGAGACCCTA
AATGAACCAAATATGCGTAACAACTTCAACTGCGGTGACACTGTTGAAGAGAGCAGTGATAATCACGAGGACGAGGAGGAGAGCGAGGACGAGGAGGATTTCCGAAGAAG
AGTGGAAGAATTTATCGACAAGGTTAATAGTGGGTGGAGAGAAGAAAGGCAAAGAACCTTGAGATTGGTTGAGTAGGTGTGACATTGATGATAGTTTCTATGAATCTTTT
AACCAACTCGAACCAATGGAATCGAGTTTCTTTTGTTTCCAATTCATCAAATTTGATCGAATCGAGATATGTATAAGGCATAGGAACCAAGTAGGTTTGCTCAAACAGTT
TCGCAAAGATGTATTTCTTTAGTGTTTGATTCAAGAACGCGATTATCCTTGAAACTGGAATATTTTTGTTTGTTATAATTTCATTACATACGAATAAAGAACTACATTGC
TTCATTTCATTTTCATCCTTGCGCATTTGGATCAAAATGAAATCAAATCCAATTCCATGCATTTGGTAATAAATGATCAAATCTAAACCAAACGTTGCCCTAGGGACGGG
CATAGTTAACTCAAGTATAATGGAGAGAAGCTCCAATTTTCCAGTTTGCAAAAGAAAAATCAAACCCAATATACATGTAGCAAAATGAAATCAAATCCAATGAAAATGGA
CCAAAATGAAATCAAATCCAAT
Protein sequenceShow/hide protein sequence
MADSIFELASEAASSTLFIFFVFNFIVLIVLFTSKRELPSSDHQNDDDMPVSIVIHSNTNTEQKFMFQKNDTVDVCEVTETLNEPNMRNNFNCGDTVEESSDNHEDEEES
EDEEDFRRRVEEFIDKVNSGWREERQRTLRLVE