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Sed0014973 (gene) of Chayote v1 genome

Gene IDSed0014973
OrganismSechium edule (Chayote v1)
DescriptionDNA ligase
Genome locationLG03:10363209..10363866
RNA-Seq ExpressionSed0014973
SyntenySed0014973
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]1.3e-1855.08Show/hide
Query:  FKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDFTARLPPSPAVAVKE
        F  S CCFH S  N    SPCSW       L HLLRRCR  LAR+ARRR     LA+A F+YDSSSYALNF+DDC  D +FPFRDFTAR PP     +K+
Subjt:  FKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDFTARLPPSPAVAVKE

Query:  PV-IPHKFHGSQDGITIS
         +    KF GS   I IS
Subjt:  PV-IPHKFHGSQDGITIS

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]2.7e-2154.07Show/hide
Query:  MLPNFHH-SSFTHNFKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDF
        ML +FHH SSF H  KSSI CF  SD      SPCSW        P LL RCR L+AR+ R  RR R  A+  FTYDSSSYALNFEDD  +DDEFP R+F
Subjt:  MLPNFHH-SSFTHNFKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDF

Query:  TARLPPSPAVAVKEPVIPHKFHGSQDGI-TISACA
         ARLP  PA          KF GSQ G+ T++AC+
Subjt:  TARLPPSPAVAVKEPVIPHKFHGSQDGI-TISACA

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]6.3e-2654.35Show/hide
Query:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD
        MLP+FHHS +F    KSS CCFH    + FL         SPCSW          +L RCR LLAR+ARRR+R   LA+  F+YDSSSYALNFEDDC  D
Subjt:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD

Query:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI
        DEFPFR+FTAR PP     +KE V   KF GS+DGI++
Subjt:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]4.8e-2654.35Show/hide
Query:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD
        MLP+FHHS +F    KSS CCFH    + FL         SPCSW          +L RCR LLAR+ARRR+R   LA+  FTYDSSSYALNF+DDC  D
Subjt:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD

Query:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI
        DEFPFRDFTAR PP     +KE     KF GS+DGI++
Subjt:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]8.2e-2654.35Show/hide
Query:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFLH--------SPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD
        MLP+FHHS +F    KSS CCFH    + FL         SPCSW          +L RCR LLAR+ARRR+R   LA+  F+YDSSSYALNFEDDC  D
Subjt:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFLH--------SPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD

Query:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI
        DEFPFR+FTAR PP     +KE V   KF GS+DGI++
Subjt:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI

TrEMBL top hitse value%identityAlignment
A0A1S3BDX7 uncharacterized protein LOC1034885656.2e-1955.08Show/hide
Query:  FKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDFTARLPPSPAVAVKE
        F  S CCFH S  N    SPCSW       L HLLRRCR  LAR+ARRR     LA+A F+YDSSSYALNF+DDC  D +FPFRDFTAR PP     +K+
Subjt:  FKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDFTARLPPSPAVAVKE

Query:  PV-IPHKFHGSQDGITIS
         +    KF GS   I IS
Subjt:  PV-IPHKFHGSQDGITIS

A0A6J1BQU1 uncharacterized protein LOC1110047681.3e-2154.07Show/hide
Query:  MLPNFHH-SSFTHNFKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDF
        ML +FHH SSF H  KSSI CF  SD      SPCSW        P LL RCR L+AR+ R  RR R  A+  FTYDSSSYALNFEDD  +DDEFP R+F
Subjt:  MLPNFHH-SSFTHNFKSSICCFHVSDHNRFLHSPCSW-------LPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDF

Query:  TARLPPSPAVAVKEPVIPHKFHGSQDGI-TISACA
         ARLP  PA          KF GSQ G+ T++AC+
Subjt:  TARLPPSPAVAVKEPVIPHKFHGSQDGI-TISACA

A0A6J1FP70 uncharacterized protein LOC1114460229.5e-1247.41Show/hide
Query:  MLPNFHHSSFTHNFKSSICCFHVSDHNRFLH---------------SPCSWLPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDD-CPHD
        ML ++H  SFT   KSSI CF   DH  FL                S  +  P L   CRNL+AR+ R RRR     +A F YD SSYALNFED+    D
Subjt:  MLPNFHHSSFTHNFKSSICCFHVSDHNRFLH---------------SPCSWLPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDD-CPHD

Query:  DEFPFRDFTARLPPSP
        DEFP RDF +RLP SP
Subjt:  DEFPFRDFTARLPPSP

A0A6J1HE78 uncharacterized protein LOC1114627413.0e-2654.35Show/hide
Query:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD
        MLP+FHHS +F    KSS CCFH    + FL         SPCSW          +L RCR LLAR+ARRR+R   LA+  F+YDSSSYALNFEDDC  D
Subjt:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD

Query:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI
        DEFPFR+FTAR PP     +KE V   KF GS+DGI++
Subjt:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI

A0A6J1K7R1 uncharacterized protein LOC1114924242.3e-2654.35Show/hide
Query:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD
        MLP+FHHS +F    KSS CCFH    + FL         SPCSW          +L RCR LLAR+ARRR+R   LA+  FTYDSSSYALNF+DDC  D
Subjt:  MLPNFHHS-SFTHNFKSSICCFHVSDHNRFL--------HSPCSWLPH-------LLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHD

Query:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI
        DEFPFRDFTAR PP     +KE     KF GS+DGI++
Subjt:  DEFPFRDFTARLPPSPAVAVKEPVIPHKFHGSQDGITI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11070.1 unknown protein1.3e-0530.47Show/hide
Query:  HNFKSSICC-----------FHVSDHNRFLHSPCSWLP------HLLRRCRNLLARM---ARRRRRMRDLAAAH----------FTYDSSSYALNFEDDC
        H  +S ICC             +    R   SP  WL        L  RCR + +R+    R      +    H          F+YD  SYALNFED+ 
Subjt:  HNFKSSICC-----------FHVSDHNRFLHSPCSWLP------HLLRRCRNLLARM---ARRRRRMRDLAAAH----------FTYDSSSYALNFEDDC

Query:  PHDDEFPFRDFTARLPPSPAVAVKEPVI
          DD+  F +FTARLP SP    +   +
Subjt:  PHDDEFPFRDFTARLPPSPAVAVKEPVI

AT5G35090.1 unknown protein2.2e-0554.55Show/hide
Query:  AHFTYDSSSYALNFE--DDCPHDDEFPFRDFTARLPPSPAVAVK
        A F YD SSYALNF+  D+  + D FP R+F+ARLP SP  + K
Subjt:  AHFTYDSSSYALNFE--DDCPHDDEFPFRDFTARLPPSPAVAVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACCCAATTTTCATCACTCTTCTTTCACTCACAACTTCAAATCCTCCATCTGCTGTTTCCATGTCTCCGATCACAACCGTTTTCTCCACTCCCCCTGTTCGTGGCT
GCCGCACTTGCTCCGCCGGTGCCGGAATCTACTGGCGCGGATGGCTCGCCGCCGTAGGCGGATGAGGGACCTCGCCGCCGCTCATTTTACCTACGATTCTTCCAGTTATG
CACTTAATTTCGAGGACGACTGCCCTCACGACGATGAGTTTCCGTTTAGGGATTTCACGGCTAGGTTGCCGCCGTCGCCGGCGGTGGCGGTTAAGGAACCTGTTATTCCT
CACAAATTTCACGGATCTCAAGATGGAATCACCATTTCTGCGTGTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATCGCAAAACCCTAAAATCCCCCGTCCTTATCCACTTCCCTTTTTCCTCTTCCCTTTTTGCCCCTAACCTATAAAATCCATCCCCTTATTATCCCCACACCCAATCACTC
CCTCACTCACAAATTCCAAAAATGTTACCCAATTTTCATCACTCTTCTTTCACTCACAACTTCAAATCCTCCATCTGCTGTTTCCATGTCTCCGATCACAACCGTTTTCT
CCACTCCCCCTGTTCGTGGCTGCCGCACTTGCTCCGCCGGTGCCGGAATCTACTGGCGCGGATGGCTCGCCGCCGTAGGCGGATGAGGGACCTCGCCGCCGCTCATTTTA
CCTACGATTCTTCCAGTTATGCACTTAATTTCGAGGACGACTGCCCTCACGACGATGAGTTTCCGTTTAGGGATTTCACGGCTAGGTTGCCGCCGTCGCCGGCGGTGGCG
GTTAAGGAACCTGTTATTCCTCACAAATTTCACGGATCTCAAGATGGAATCACCATTTCTGCGTGTGCCTGATTTGTTATGCCACATCGGATTTTTATTTCCCATTCTCT
TTTTGCCCATTTTTTATGTAAATTCCCCGTGAGAATTTCTCCTTCAATTGTAAATATGTATTTCTTTTTTTGGTTGTTAATCAAATAAATTATGAATTTCTGGTTAAA
Protein sequenceShow/hide protein sequence
MLPNFHHSSFTHNFKSSICCFHVSDHNRFLHSPCSWLPHLLRRCRNLLARMARRRRRMRDLAAAHFTYDSSSYALNFEDDCPHDDEFPFRDFTARLPPSPAVAVKEPVIP
HKFHGSQDGITISACA