CuGenDBv2

Gene ID	Sed0015016
Organism	Sechium edule (Chayote v1)
Description	Cytochrome c biogenesis B
Genome location	Contig00107:78642..79262
RNA-Seq Expression	Sed0015016
Synteny	Sed0015016
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0015232 - heme transporter activity (molecular function)
InterPro domains	IPR003544 - Cytochrome c-type biogenesis protein CcmB

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56106.1 cytochrome c biogenesis B [Cucumis melo subsp. melo]

1.1e-112

99.03

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        S+SLQD
Subjt:  SISLQD

QXE45588.1 cytochrome c biogenesis B [Prosopis glandulosa]

8.2e-108

95.63

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM +LPYQFGRSGMDRLNILLGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

YP_004849329.1 cytochrome c biogenesis B [Cucumis sativus]

3.0e-110

97.09

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        S+SLQD
Subjt:  SISLQD

YP_009498132.1 cytochrome c biogenesis B [Senna tora]

5.3e-107

95.15

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM +LPYQFGRSGMDRLNI LGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

YP_009913630.1 cytochrome c biogenesis B [Luffa acutangula]

3.2e-112

99.03

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPT+SRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

TrEMBL top hits

e value

%identity

Alignment

A0A3Q9CS08 Cytochrome c biogenesis B

5.4e-113

99.03

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        S+SLQD
Subjt:  SISLQD

A0A3S5HWV9 Cytochrome c biogenesis B

2.6e-107

95.15

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK+IFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM +LPYQFGRSGMDRLNI LGSLVLTLLCGIHSR ALGITSS GWNSSQNPTTSPTSLPPT+SRTSIETEWFHV SSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

A0A7D6C7C3 Cytochrome c biogenesis B

1.6e-112

99.03

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPT+SRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

G3EIY1 Cytochrome c biogenesis B

1.5e-110

97.09

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPM KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        S+SLQD
Subjt:  SISLQD

G3EU22 Cytochrome c biogenesis B

5.4e-113

99.03

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Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SC+FCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        S+SLQD
Subjt:  SISLQD

SwissProt top hits

e value

%identity

Alignment

P38454 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

1.7e-55

59.51

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Query:  RLFLSLYHKRIF--PSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        ++FL L+++ I    ST IT+FS FL YIVVTPLM+GF KDF CH HLG I I  LF F P  F +N+ EDGTLELYYLS YCL KILL +L GH V+QI
Subjt:  RLFLSLYHKRIF--PSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        S VFC FP+ +L YQF +S M+   I++GS + TL+CGIHS  ALGITS+ GWNS QN TT PT LP  +  TSIETEWFHV   +GY   F+  +PI V
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQ
        SI+LQ
Subjt:  SISLQ

P93280 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

3.6e-82

80.58

Show/hide

Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLF  LY+K IF STPITSFS FL YIVVTPLMLGFEKDF CH HLG I I  LF F  A F RNEKEDGTLELYYLS YCLPKILLLQLVGH VIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        SCVFCGFPM +L YQFGRSGMD LNILLGSLVLTLLCGIHS  ALGITSS GWNSSQN TT PT LP T+  TSIETEWFHV   IGY   FVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

Arabidopsis top hits

e value

%identity

Alignment

ATMG00110.1 cytochrome C biogenesis 206

3.4e-104

92.23

Show/hide

Query:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IF STPITSFS FLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLS YCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQI

Query:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV
        S VFCGFPM +L YQFGRSGMDRLNI LGSLVLTLLCGIHSRSALGITSS GWNSSQNPTTSPT LP T+SRTSIETEWFHV SSIGYSS FVSLFPISV
Subjt:  SCVFCGFPMFKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISV

Query:  SISLQD
        SISLQD
Subjt:  SISLQD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGACGACTCTTTCTTTCACTATATCATAAACGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTAACGCCCTTAATGCTAGG
TTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACAC
TCGAATTGTATTATTTAAGTGCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCTGTGGTTTTCCCATGTTC
AAACTTCCGTACCAATTCGGTCGATCCGGAATGGATCGGTTAAACATTCTATTAGGGAGCCTGGTCTTGACTCTTCTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAAT
CACATCCAGCCGTGGTTGGAACAGCTCGCAAAATCCAACCACTTCACCTACTTCATTGCCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTT
CATCGATTGGTTATTCCTCCCCGTTCGTATCTCTTTTTCCAATTTCTGTCTCGATTAGTTTACAAGATTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHRVIQISCVFCGFPMF
KLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISVSISLQD

Sed0015016 (gene) of Chayote v1 genome