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Sed0015037 (gene) of Chayote v1 genome

Gene IDSed0015037
OrganismSechium edule (Chayote v1)
DescriptionIntegrase, catalytic core
Genome locationLG10:9923317..9923601
RNA-Seq ExpressionSed0015037
SyntenySed0015037
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833196.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]9.2e-1455.56Show/hide
Query:  EFGEIWYAEGHSLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        E G I  A    LD+S++S    KPS+E PP LELKTLP HLKYAYLG+  TLPVIIS+ L  + +  L+E+LK H +AIG
Subjt:  EFGEIWYAEGHSLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

XP_030497586.1 uncharacterized protein LOC115713243 [Cannabis sativa]1.2e-1360Show/hide
Query:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        SL++ + +  P KPSI+ PP LELK LP HLKYAYLG+  TLPVII+S L   D+  L+E+LKKHK+AIG
Subjt:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

XP_030504461.1 uncharacterized protein LOC115719521 [Cannabis sativa]1.1e-1461.43Show/hide
Query:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        SL++ + +  P+KPSI+ PP LELK LP HLKYAYLG+ +TLPVIIS+ L    + LL+E+LKKHKRAIG
Subjt:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

XP_030506603.1 uncharacterized protein LOC115721515 [Cannabis sativa]2.4e-1460Show/hide
Query:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        SL++S+ +  P KPSI+ PP LELK LP HLKY YLG G+TLPVIIS+ L    + LL+++LKK+KRAIG
Subjt:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

XP_030508913.1 uncharacterized protein LOC115723563 [Cannabis sativa]2.4e-1460Show/hide
Query:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        SL++S+ +  P KPSI+ PP LELK LP HLKY YLG G+TLPVIIS+ L    + LL+++LKK+KRAIG
Subjt:  SLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

TrEMBL top hitse value%identityAlignment
A0A1U8FDR5 LOW QUALITY PROTEIN: uncharacterized protein LOC1078569271.4e-1256.52Show/hide
Query:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        LD+ +R   P KPSIE PP LELK LP HLKYA+LG G TLPVI+++ L       LI +L+K+ RAIG
Subjt:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

A0A1U8FHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1078547191.4e-1256.52Show/hide
Query:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        LD+ +R   P KPSIE PP LELK LP HLKYA+LG G TLPVI+++ L       LI +L+K+ RAIG
Subjt:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

A0A2G2VNE6 ATP synthase subunit alpha, mitochondrial2.9e-1357.97Show/hide
Query:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        LD+ +R + P KPSIE PPVLELK LP HLKYA+LG G TLPVI+++ L       LI +LK++KR IG
Subjt:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

A0A2G2VTQ8 Reverse transcriptase1.4e-1256.52Show/hide
Query:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        LD+ +R   P KPSIE PP LELK LP HLKYA+LG G TLPVI+++ L       LI +L+K+ RAIG
Subjt:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

A0A5B6UKZ2 Integrase, catalytic core7.6e-1455.07Show/hide
Query:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG
        LD+S RS  P +PSIE PP LELK+LP HLKYAYLG   TLPV+IS++L P+ +  L++++++ K+A+G
Subjt:  LDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAACGCAAAGACGAATCTTCTGATGAAAAATGGGAATTCGGCGAGATTTGGTACGCTGAAGGCCACTCGTTAGACATATCTGACAGAAGCGCTCTGCCAATAAA
ACCGTCGATCGAAGTACCACCAGTCTTAGAGCTGAAAACCCTACCAGATCACCTTAAATACGCCTATCTTGGCAAGGGCAAAACATTGCCCGTGATTATCTCTTCCCAAC
TTTGGCCAAATGATGACATATTGCTCATTGAGTTGTTGAAAAAACATAAGCGAGCAATTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAACGCAAAGACGAATCTTCTGATGAAAAATGGGAATTCGGCGAGATTTGGTACGCTGAAGGCCACTCGTTAGACATATCTGACAGAAGCGCTCTGCCAATAAA
ACCGTCGATCGAAGTACCACCAGTCTTAGAGCTGAAAACCCTACCAGATCACCTTAAATACGCCTATCTTGGCAAGGGCAAAACATTGCCCGTGATTATCTCTTCCCAAC
TTTGGCCAAATGATGACATATTGCTCATTGAGTTGTTGAAAAAACATAAGCGAGCAATTGGCTAA
Protein sequenceShow/hide protein sequence
MRKRKDESSDEKWEFGEIWYAEGHSLDISDRSALPIKPSIEVPPVLELKTLPDHLKYAYLGKGKTLPVIISSQLWPNDDILLIELLKKHKRAIG