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Sed0015058 (gene) of Chayote v1 genome

Gene IDSed0015058
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationLG06:37788877..37789128
RNA-Seq ExpressionSed0015058
SyntenySed0015058
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149790.1 probable calcium-binding protein CML28 [Cucumis sativus]6.4e-2779.01Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D+GVN+ D E+IFKRFDANGDG+ISA ELGDAL  FGV+SEDAK MMDAIDKDGDG+ISF+EF +FAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

XP_016902062.1 PREDICTED: polcalcin Bra n 2-like [Cucumis melo]1.1e-2982.72Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D+GVN+ DCE+IFKRFDANGDG+ISA ELGDAL GFGV+SEDAK MMDAIDKDGDG+ISF+EFS+FAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

XP_022143412.1 polcalcin Bra n 2-like [Momordica charantia]2.0e-2882.05Show/hide
Query:  NGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        +GV+AE+CE++FKRFDANGDG+ISA ELGDALKGFGV++EDAK+MMDAIDKDGDGFIS +EFS+FAK+NRALMKDFAK
Subjt:  NGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

XP_022948513.1 probable calcium-binding protein CML28 [Cucurbita moschata]5.2e-2982.72Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+DNGV++ +CE+IFKRFDANGDGQISA ELGDAL G GV+SEDAK MMDAIDKDGDGFISF+EF EFAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]2.0e-2881.48Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+++GV+A DCE+IFKRFDANGDG+ISA ELGDAL GFGV++EDAK MMDAIDKDGDG ISFEEF+EFAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

TrEMBL top hitse value%identityAlignment
A0A0A0L775 Putative calcium-binding protein CML283.1e-2779.01Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D+GVN+ D E+IFKRFDANGDG+ISA ELGDAL  FGV+SEDAK MMDAIDKDGDG+ISF+EF +FAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

A0A1S4E1G1 polcalcin Bra n 2-like5.1e-3082.72Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D+GVN+ DCE+IFKRFDANGDG+ISA ELGDAL GFGV+SEDAK MMDAIDKDGDG+ISF+EFS+FAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

A0A6J1CQR0 polcalcin Bra n 2-like9.6e-2982.05Show/hide
Query:  NGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        +GV+AE+CE++FKRFDANGDG+ISA ELGDALKGFGV++EDAK+MMDAIDKDGDGFIS +EFS+FAK+NRALMKDFAK
Subjt:  NGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

A0A6J1G9I0 probable calcium-binding protein CML282.5e-2982.72Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+DNGV++ +CE+IFKRFDANGDGQISA ELGDAL G GV+SEDAK MMDAIDKDGDGFISF+EF EFAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

A0A6J1KB11 probable calcium-binding protein CML282.5e-2982.72Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+DNGV++ +CE+IFKRFDANGDGQISA ELGDAL G GV+SEDAK MMDAIDKDGDGFISF+EF EFAK+NRALMKDFAK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

SwissProt top hitse value%identityAlignment
P69198 Polcalcin Bra n 21.5e-1862.2Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D    AE  ++IFK+FDANGDG+ISA+ELGDALK  G V  +D K MM  ID DGDG+IS++EFS+FA  NR LMKD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

P69199 Polcalcin Bra r 21.5e-1862.2Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D    AE  ++IFK+FDANGDG+ISA+ELGDALK  G V  +D K MM  ID DGDG+IS++EFS+FA  NR LMKD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

Q39419 Polcalcin Bet v 44.3e-1858.75Show/hide
Query:  DNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        D+  +  + E+IFKRFDANGDG+ISAAELG+ALK  G +  ++ K MM  ID DGDGFISF+EF++F + NR L+KD AK
Subjt:  DNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

Q8VWY6 Polcalcin Nic t 13.3e-1858.54Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+++  +  D E+IFKRFD NGDG+IS+AELG+ LK  G V SE+ + MM  +D DGDGFIS+EEF EFA+ NR L+KD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

Q9SRP7 Probable calcium-binding protein CML281.5e-1863.41Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D    AE  ++IFK+FDANGDG+ISAAELGDALK  G V  ED K MM  ID DGDG+IS++EF +FA  NR LMKD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family1.9e-0846.67Show/hide
Query:  DCEKIFKRFDANGDGQISAAELGDALKGFG--VNSEDAKSMMDAIDKDGDGFISFEEFSE
        + E +FK+FD NGDG+IS+ ELG  +   G  V  E+ +  +  ID+ GDG+I+FEEF E
Subjt:  DCEKIFKRFDANGDGQISAAELGDALKGFG--VNSEDAKSMMDAIDKDGDGFISFEEFSE

AT1G66400.1 calmodulin like 231.1e-0842.67Show/hide
Query:  EDCEKIFKRFDANGDGQISAAELGDALKGFGVNS--EDAKSMMDAIDKDGDGFISFEEF------SEFAKNNRAL
        ED +K+F+RFD N DG+IS  EL D +     N+  E+ K+MM   D DG+GFI  +EF      S+ + NN A+
Subjt:  EDCEKIFKRFDANGDGQISAAELGDALKGFGVNS--EDAKSMMDAIDKDGDGFISFEEF------SEFAKNNRAL

AT1G73630.1 EF hand calcium-binding protein family3.8e-0940Show/hide
Query:  DCEKIFKRFDANGDGQISAAELGDALKGFGVN--SEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMK
        + +K+F +FDANGDG+IS +ELG+  K  G +   E+   ++D ID D DGFI+ EEF+   +++ + ++
Subjt:  DCEKIFKRFDANGDGQISAAELGDALKGFGVN--SEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMK

AT3G03430.1 Calcium-binding EF-hand family protein1.1e-1963.41Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D    AE  ++IFK+FDANGDG+ISAAELGDALK  G V  ED K MM  ID DGDG+IS++EF +FA  NR LMKD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK

AT5G17480.1 pollen calcium-binding protein 11.7e-1759.76Show/hide
Query:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK
        M+D    AE  ++IFK+FDANGDG+ISAAEL +ALK  G V ++D K MM  ID DGDG IS++EF++FA  NR LMKD AK
Subjt:  MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFG-VNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACAATGGCGTAAATGCAGAGGATTGCGAAAAGATTTTCAAGCGATTCGACGCAAACGGTGATGGGCAGATCTCAGCGGCCGAGCTTGGCGATGCGTTGAAAGG
TTTCGGAGTGAATTCTGAGGATGCAAAGAGCATGATGGATGCCATTGACAAAGATGGCGACGGCTTCATTTCGTTCGAAGAGTTCTCCGAATTCGCGAAGAATAATCGTG
CCTTGATGAAGGATTTCGCGAAGGAGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACAATGGCGTAAATGCAGAGGATTGCGAAAAGATTTTCAAGCGATTCGACGCAAACGGTGATGGGCAGATCTCAGCGGCCGAGCTTGGCGATGCGTTGAAAGG
TTTCGGAGTGAATTCTGAGGATGCAAAGAGCATGATGGATGCCATTGACAAAGATGGCGACGGCTTCATTTCGTTCGAAGAGTTCTCCGAATTCGCGAAGAATAATCGTG
CCTTGATGAAGGATTTCGCGAAGGAGTGTTAG
Protein sequenceShow/hide protein sequence
MSDNGVNAEDCEKIFKRFDANGDGQISAAELGDALKGFGVNSEDAKSMMDAIDKDGDGFISFEEFSEFAKNNRALMKDFAKEC