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Sed0015064 (gene) of Chayote v1 genome

Gene IDSed0015064
OrganismSechium edule (Chayote v1)
DescriptionCotton fiber protein
Genome locationLG07:36508396..36509198
RNA-Seq ExpressionSed0015064
SyntenySed0015064
Gene Ontology termsNA
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034569.1 uncharacterized protein E6C27_scaffold65G005850 [Cucumis melo var. makuwa]3.1e-4267.74Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGF-QQFEFSPSTTPLFRF-NRGLR---RRRDLCSVLFSCRCGRGF
        MQ KR PIFQKLS+F KVSIFIAKM+RP+IPKLLFLKK S  +KNFE+LQ+YNYG F + F+FSPSTTPLFRF NRG R   RR D+CSVLF CRC  G 
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGF-QQFEFSPSTTPLFRF-NRGLR---RRRDLCSVLFSCRCGRGF

Query:  GG-----EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV
         G     + G Y VEEA    LDWSD DD SIDRRAE+FI KFYAD  +ERLAS+
Subjt:  GG-----EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV

KAE8648793.1 hypothetical protein Csa_009258 [Cucumis sativus]7.8e-3365.22Show/hide
Query:  VSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFN-----RGLRRRRDLCSVLFSCRC-GRGFGGE----GGGYRVEEA
        VSIF+AKM+RP+IPKLLFLKK S R K+FE+L +YNYG  + FEFSPSTTPLFRFN     RGL RR D+CSVLF CRC   G GGE     G Y VEEA
Subjt:  VSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFN-----RGLRRRRDLCSVLFSCRC-GRGFGGE----GGGYRVEEA

Query:  ----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV
            LDWSD+DD SIDRRAE+FI KFY D  +ERL S+
Subjt:  ----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV

XP_004135396.1 uncharacterized protein LOC101211232 [Cucumis sativus]6.6e-4066.45Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFN-----RGLRRRRDLCSVLFSCRC-GRG
        MQ KR PIFQKLSNF +VSIF+AKM+RP+IPKLLFLKK S R K+FE+L +YNYG  + FEFSPSTTPLFRFN     RGL RR D+CSVLF CRC   G
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFN-----RGLRRRRDLCSVLFSCRC-GRG

Query:  FGGE----GGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV
         GGE     G Y VEEA    LDWSD+DD SIDRRAE+FI KFY D  +ERL S+
Subjt:  FGGE----GGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV

XP_023542510.1 uncharacterized protein LOC111802395 [Cucurbita pepo subsp. pepo]3.6e-3056.49Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG
        MQ KRQPI +KL NF KVSIF+AKM++P+ PKLLFLKK S  ++ FE+L         QF+FSPSTTPLFR  RG R   RR  + SVLF CRC   FGG
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG

Query:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV
        E  G         R  EALDWS+  +++ SIDRRAELFI KFYAD  +ERLA++
Subjt:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV

XP_038893176.1 uncharacterized protein LOC120082033 [Benincasa hispida]8.0e-3866.44Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLRR--RRDLCSVLFSCRC-GRGFGG
        MQ KR PIFQKLS+F KVSIFIAKM+RP+IPKLLFLKK S R  +FE+  +YNYG  + F+FSPSTTPLFRF RG R   RRD+ SVLF CRC G   G 
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLRR--RRDLCSVLFSCRC-GRGFGG

Query:  ---EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLA
           E G Y VEEA    LDWSD+DD SIDRRAE+FI KFYAD  +ERLA
Subjt:  ---EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLA

TrEMBL top hitse value%identityAlignment
A0A5A7SZQ9 Uncharacterized protein1.5e-4267.74Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGF-QQFEFSPSTTPLFRF-NRGLR---RRRDLCSVLFSCRCGRGF
        MQ KR PIFQKLS+F KVSIFIAKM+RP+IPKLLFLKK S  +KNFE+LQ+YNYG F + F+FSPSTTPLFRF NRG R   RR D+CSVLF CRC  G 
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGF-QQFEFSPSTTPLFRF-NRGLR---RRRDLCSVLFSCRCGRGF

Query:  GG-----EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV
         G     + G Y VEEA    LDWSD DD SIDRRAE+FI KFYAD  +ERLAS+
Subjt:  GG-----EGGGYRVEEA----LDWSDEDDGSIDRRAELFIHKFYADRNLERLASV

A0A5B7BHT9 Uncharacterized protein5.1e-2240.85Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRF--NRGLRRR--RDLCSVLFSCRC-GRGF
        M  KR PIFQK+S+  K SI IAKMR+P+IPKL+FLKK S + K F++L++YNYG  Q+++FSPS+TPL  +   +  ++   RD+ S+ F CRC GR  
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRF--NRGLRRR--RDLCSVLFSCRC-GRGF

Query:  GGEGG------------------GYRVEEALDWSDEDDGSIDRRAELFIHKFYADRNLERLASV
          EGG                     + E   +S  ++ S+D RA+ FI +FY +  ++R  SV
Subjt:  GGEGG------------------GYRVEEALDWSDEDDGSIDRRAELFIHKFYADRNLERLASV

A0A6J1G0E9 uncharacterized protein LOC1114495336.2e-2855.84Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG
        MQ KRQPI QKL NF KVSIF+AKM++P+ PKLLFLKK S  ++ FE+L         QF+FSPSTTPLFR  RG R   RR  + SVLF  RC   FGG
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG

Query:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV
        E  G         R  EA DWS+  +++ SIDRRAELFI KFYAD  +ERLA++
Subjt:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV

A0A6J1HX57 uncharacterized protein LOC1114674648.7e-3057.14Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG
        MQ KRQPI QKL NF K SIF+AKM++P+ PKLLFLKK S  +K FE+L         QF+FSPSTTPLFR  RG R   RR  + SVLF CRC   FGG
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLR---RRRDLCSVLFSCRCGRGFGG

Query:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV
        E  G         RV EALD S+  +++ SIDRRAELFI KFYAD  +ERLA++
Subjt:  EGGGY--------RVEEALDWSD--EDDGSIDRRAELFIHKFYADRNLERLASV

F6HFN2 Uncharacterized protein2.3e-2239.74Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLRRR---RDLCSVLFSCRCGRGFGG
        M  KR PIFQK+SN  ++SIF+ KM +P+   L+   +KS + K+F++L++YNYG  ++++FSPS+TPLF++     +    RD+CS+ F CRC   F  
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLRRR---RDLCSVLFSCRCGRGFGG

Query:  E--GGGYRVEE--------------ALDWSDEDDGSIDRRAELFIHKFYADRNLER
        +   G Y +E                LDW DE+D S+D+RAE FI +FY +  ++R
Subjt:  E--GGGYRVEE--------------ALDWSDEDDGSIDRRAELFIHKFYADRNLER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68350.1 unknown protein1.8e-1131.48Show/hide
Query:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFR-FNRGLRRRRD----LCSVLFSCRC-GR-
        M  +R+PIFQ++S   K+SI    +RRP+IP+L  +  K  RSK  ++LQ +NY   Q+++FSPS+T   + + + ++  R     +  +LF  +C GR 
Subjt:  MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFR-FNRGLRRRRD----LCSVLFSCRC-GR-

Query:  -------------------GFGGEGGGYRVEEALDWSDEDDGSIDRRAELFIHKFYADRNLE
                             G         +  D+  EDD SID +AE FI KFY +  ++
Subjt:  -------------------GFGGEGGGYRVEEALDWSDEDDGSIDRRAELFIHKFYADRNLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCAAAAGGCAACCCATTTTCCAAAAGCTCTCAAATTTCCATAAAGTTTCAATCTTTATCGCCAAAATGAGAAGACCCATGATCCCAAAGCTCCTTTTCCTCAA
GAAAAAATCATGGAGGTCCAAGAATTTTGAGGTTCTTCAATACTATAACTATGGGGGTTTTCAACAGTTCGAATTCTCGCCGTCGACCACTCCTCTGTTCCGTTTTAACA
GAGGCCTCCGCCGCCGCCGTGATTTGTGCTCGGTGCTGTTTTCGTGCCGATGCGGGCGAGGTTTCGGAGGAGAAGGAGGAGGTTACAGAGTGGAGGAGGCATTGGATTGG
AGTGATGAAGATGATGGTTCCATTGATCGGAGGGCTGAATTGTTCATTCATAAGTTCTATGCTGATAGGAATTTGGAGAGGCTGGCATCCGTTTGA
mRNA sequenceShow/hide mRNA sequence
CCAACGGCTACCTTCTTATTCCTTCACACTTCATTCCTCTCTTTAAATCCCCCATGAACATCAGCTTCAGTTCTTCAAACCCATTCATTTCTTTTCAAATCAAACAATAA
TGCAGATCAAAAGGCAACCCATTTTCCAAAAGCTCTCAAATTTCCATAAAGTTTCAATCTTTATCGCCAAAATGAGAAGACCCATGATCCCAAAGCTCCTTTTCCTCAAG
AAAAAATCATGGAGGTCCAAGAATTTTGAGGTTCTTCAATACTATAACTATGGGGGTTTTCAACAGTTCGAATTCTCGCCGTCGACCACTCCTCTGTTCCGTTTTAACAG
AGGCCTCCGCCGCCGCCGTGATTTGTGCTCGGTGCTGTTTTCGTGCCGATGCGGGCGAGGTTTCGGAGGAGAAGGAGGAGGTTACAGAGTGGAGGAGGCATTGGATTGGA
GTGATGAAGATGATGGTTCCATTGATCGGAGGGCTGAATTGTTCATTCATAAGTTCTATGCTGATAGGAATTTGGAGAGGCTGGCATCCGTTTGAATCTTGGATCTTGAA
ATGAGTTATTCTTTGCTTGGATTTGTTTGGTTTCATTCTTTTGGTTTTTATTTGTTGTGTTATTTTTGTGGTGTGTTTAATTCTCTCCACTCAAGTTTTAGAGAGGGTGG
AGATTTGGTTTTTCATTTATTCTGTTCATTTATGTAAGATTTTGGACTATTGAGGGGAGGAAATTTTTTGTTCAGCGCTGCACAATAAAATTGTATTTAATATTGAGCAA
TACTTGGGAAGTAGGTTGGTGTATGATTTGCAA
Protein sequenceShow/hide protein sequence
MQIKRQPIFQKLSNFHKVSIFIAKMRRPMIPKLLFLKKKSWRSKNFEVLQYYNYGGFQQFEFSPSTTPLFRFNRGLRRRRDLCSVLFSCRCGRGFGGEGGGYRVEEALDW
SDEDDGSIDRRAELFIHKFYADRNLERLASV