CuGenDBv2

Gene ID	Sed0015110
Organism	Sechium edule (Chayote v1)
Description	CST complex subunit STN1
Genome location	LG04:36057833..36058551
RNA-Seq Expression	Sed0015110
Synteny	Sed0015110
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0008033 - tRNA processing (biological process) GO:0070525 - tRNA threonylcarbamoyladenosine metabolic process (biological process) GO:0000408 - EKC/KEOPS complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0004674 - protein serine/threonine kinase activity (molecular function) GO:0004712 - protein serine/threonine/tyrosine kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0106310 - protein serine kinase activity (molecular function)
InterPro domains	IPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR012340 - Nucleic acid-binding, OB-fold IPR040260 - Replication factor A protein-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]

7.6e-59

71.26

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Query:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP
        M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV  DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H 
Subjt:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP

Query:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT
        PDVR +A +A HFAAQIRVGI+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Subjt:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-60

73.37

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSL  ++ SSSSSSD +SFSR+ YAVS  EI GVVV  DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFA  RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP
         I  +A HFAAQIRVGI+ARVRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP

KAG7011223.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-60

73.37

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSL  ++ SSSSSSD +SFSR+ YAVS  EI GVVV  DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFA  RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP
         I  +A HFAAQIRVGI+ARVRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]

2.8e-61

74.56

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSL  T  +SSSSSD +SFSR+ YAVS  EI GVVV  DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP
         I  +A HFAAQIRVGI+ARVRGR+S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP

XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]

2.8e-61

73.96

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSLA +  SSSSSSD +SFSR+ YAVS  E+ GVVV  DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP
         I  +A HFAAQIRVGI+ARVRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNV0 OB domain-containing protein

1.2e-57

72.12

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Query:  ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGV
        +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV  DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H  DVR +  +
Subjt:  ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGV

Query:  AAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT
        A HFAAQIRVGI+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P PT
Subjt:  AAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

A0A1S3BLT5 CST complex subunit STN1

3.7e-59

71.26

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Query:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP
        M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV  DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H 
Subjt:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP

Query:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT
        PDVR +A +A HFAAQIRVGI+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Subjt:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

A0A5D3E3H2 CST complex subunit STN1

3.7e-59

71.26

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Query:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP
        M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV  DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H 
Subjt:  MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHP

Query:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT
        PDVR +A +A HFAAQIRVGI+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Subjt:  PDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN1

1.4e-61

74.56

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSL  T  +SSSSSD +SFSR+ YAVS  EI GVVV  DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP
         I  +A HFAAQIRVGI+ARVRGR+S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP

A0A6J1HUX0 CST complex subunit STN1

5.0e-56

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Query:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR
        +Q+  +LY+THIKLL FDLNSL  T  SSSSSSD +SFSR+ +AVS AEI GVVVS DLKPNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR
Subjt:  EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVR

Query:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCI
         I  +A HFAAQIRVGI+ARVRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+
Subjt:  FIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCI

SwissProt top hits

e value

%identity

Alignment

Q9LMK5 CST complex subunit STN1

2.3e-34

49.06

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Query:  QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAG
        ++L +TH KL+  D+  L   +P+ S+S   +        VSR EI G +VS DL P +FLKF VDDGT  V+C++WLN  TS YF SR  P  +  +A 
Subjt:  QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAG

Query:  VAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY
         A   AAQIR+G +ARVRGR+  YRG +Q+T +  VAE DPNAEILHWL+C++L + CY
Subjt:  VAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY

Arabidopsis top hits

e value

%identity

Alignment

AT1G07130.1 Nucleic acid-binding, OB-fold-like protein

1.7e-35

49.06

Show/hide

Query:  QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAG
        ++L +TH KL+  D+  L   +P+ S+S   +        VSR EI G +VS DL P +FLKF VDDGT  V+C++WLN  TS YF SR  P  +  +A 
Subjt:  QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAG

Query:  VAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY
         A   AAQIR+G +ARVRGR+  YRG +Q+T +  VAE DPNAEILHWL+C++L + CY
Subjt:  VAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY

Sequences

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CDS sequence

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ATGGAGCAACAACAACAAGCACTGTACAACACCCACATAAAGCTCCTGTGTTTCGACCTCAATTCACTCGCCCCAACAAACCCTTCTTCTTCTTCTTCCTCGGATCCGAT
CTCCTTCTCTCGCAAATCCTACGCCGTTTCTCGCGCAGAGATCGCCGGCGTCGTCGTCTCTTGCGACCTGAAACCTAATCGCTTTCTCAAATTCTCCGTCGACGATGGCA
CCGCCACTGTTTCCTGTATCCTCTGGCTCAACCATCACACATCACCTTATTTTGCATCGCGCCGCCACCCTCCGGATGTTCGATTCATTGCAGGTGTGGCGGCCCATTTC
GCCGCCCAAATTAGGGTTGGGATTCTCGCTAGGGTTCGGGGAAGGTTGAGCTGCTATAGAGGCCAGGTGCAGCTCACGGTGTCTGATGTTGTGGCGGAGCACGATCCCAA
TGCTGAGATTCTGCATTGGTTGGATTGTATCAGGTTAGCTCGAAAGTGTTATGATCTCGTTCCTTTGCCCACGTAG

mRNA sequence

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Protein sequence

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MEQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHF
AAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

Sed0015110 (gene) of Chayote v1 genome