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Sed0015138 (gene) of Chayote v1 genome

Gene IDSed0015138
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal protein P2-like
Genome locationLG10:5398939..5401637
RNA-Seq ExpressionSed0015138
SyntenySed0015138
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2957147.1 60S acidic ribosomal P2B-like [Olea europaea subsp. europaea]3.6e-0754.84Show/hide
Query:  MKSSWLKQYIQVGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA
        M  +W + +  VG E +DER+ELLLSQVKGKD+ EL+A G +K+AS+PS  GA   A+A PA
Subjt:  MKSSWLKQYIQVGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA

XP_004143310.2 60S acidic ribosomal protein P2 [Cucumis sativus]2.4e-0671.43Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGA
        VG+E EDER+ELLLSQVKGKD+AELVACG +KMA +P    A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGA

XP_007027672.1 PREDICTED: 60S acidic ribosomal protein P2-4 [Theobroma cacao]2.4e-0662.5Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG EVED+R++LLLS+VKGKD+ EL+A G +K+AS+PS  G A+SA A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

XP_022143771.1 60S acidic ribosomal protein P2A-like [Momordica charantia]8.1e-0770.59Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA
        VG+EVED+R+ELLLSQVKG DLAE+VACG +KMASIP  AGAA++  A  A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA

XP_039034173.1 60S acidic ribosomal protein P2-2-like [Hibiscus syriacus]1.8e-0663.04Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSA
        VG E ED+R+ELLLS+VKGKD+ EL+ACG +K+AS+PS  GA  +A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSA

TrEMBL top hitse value%identityAlignment
A0A061F117 60S acidic ribosomal protein P2-41.1e-0662.5Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG EVED+R++LLLS+VKGKD+ EL+A G +K+AS+PS  G A+SA A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

A0A2G5D6V2 Uncharacterized protein1.1e-0664.58Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG EVEDER+ELLLSQVKGKD+ EL+A G +K+AS+PS  G A  A++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

A0A2G5D6W1 Uncharacterized protein1.1e-0664.58Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG EVEDER+ELLLSQVKGKD+ EL+A G +K+AS+PS  G A  A++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

A0A6J1ARA8 60S acidic ribosomal protein P2-4-like1.1e-0662.5Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG EVED+R++LLLS+VKGKD+ EL+A G +K+AS+PS  G A+SA A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

A0A6J1CQB9 60S acidic ribosomal protein P2A-like3.9e-0770.59Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA
        VG+EVED+R+ELLLSQVKG DLAE+VACG +KMASIP  AGAA++  A  A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA

SwissProt top hitse value%identityAlignment
P41099 60S acidic ribosomal protein P21.3e-0754.17Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA
        VG + +D+++ELLLSQVKGKD+ EL+A G +++AS+PS  G A++A A
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIA

P46252 60S acidic ribosomal protein P2A6.4e-0752.94Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA
        VG EV++E++ELLLSQ+ GKD+ EL+A G +K AS+P   G    A A PA
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPA

P51407 60S acidic ribosomal protein P2-12.9e-0757.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS

Q9LXM8 60S acidic ribosomal protein P2-48.4e-0756.52Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSA
        VG +V+ E +ELLL +V GKD+AEL+A G +K+AS+PS  G A+SA
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSA

Q9SLF7 60S acidic ribosomal protein P2-22.9e-0757.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family2.1e-0857.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS

AT2G27710.2 60S acidic ribosomal protein family2.1e-0857.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS

AT2G27710.3 60S acidic ribosomal protein family2.1e-0857.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS

AT2G27710.4 60S acidic ribosomal protein family9.2e-0962.79Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAA
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  GA+
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAA

AT2G27720.1 60S acidic ribosomal protein family2.1e-0857.78Show/hide
Query:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS
        VG E ED ++ELLL +VKGKDLAEL+A G +K+AS+PS  G  ++
Subjt:  VGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGTTCCTGGCTCAAACAATACATTCAAGTTGGAATTGAGGTTGAGGATGAAAGACTTGAGCTTCTTCTTTCCCAAGTTAAGGGCAAGGATTTAGCAGAACTTGT
TGCCTGTGGGAGCCAGAAGATGGCTTCCATCCCTTCTGCCGCCGGGGCTGCCATGTCGGCCATTGCACGACCCGCCACCCATATTCCCAATATGTTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGTTCCTGGCTCAAACAATACATTCAAGTTGGAATTGAGGTTGAGGATGAAAGACTTGAGCTTCTTCTTTCCCAAGTTAAGGGCAAGGATTTAGCAGAACTTGT
TGCCTGTGGGAGCCAGAAGATGGCTTCCATCCCTTCTGCCGCCGGGGCTGCCATGTCGGCCATTGCACGACCCGCCACCCATATTCCCAATATGTTTTCTTAA
Protein sequenceShow/hide protein sequence
MKSSWLKQYIQVGIEVEDERLELLLSQVKGKDLAELVACGSQKMASIPSAAGAAMSAIARPATHIPNMFS