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Sed0015154 (gene) of Chayote v1 genome

Gene IDSed0015154
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein 6, chloroplastic-like
Genome locationLG05:28856761..28857867
RNA-Seq ExpressionSed0015154
SyntenySed0015154
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031743.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3576.92Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS
        MSISTFFGCRI  PPL+N  AR   AP SGG+L IECSSRP KKATAHHMKTRPRKSQPWDI+RKPTVYPPLP+LPPDWT +S VSGDG+ EVASSI+ S
Subjt:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS

Query:  SSEP
           P
Subjt:  SSEP

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]1.5e-3679.81Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSISTF GC+I  PPLLNS A K AP S GNLLIECSSRP KKATAHHMKTRPRKSQPWDIRRKPTVYPPLP LPPDWTL+SSVSGD + E+A SIS S+
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEPV
          PV
Subjt:  SEPV

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]2.1e-3577.67Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSIST+FG RI  PPLLNS A K AP SGGNL+IECSSRP KKATAHHMKTRPRKSQPWDIRRKPTVYPPLP LPPDWT +SS+S D   EVASSI+ S+
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEP
          P
Subjt:  SEP

XP_023523426.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]7.4e-3676.92Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS
        MSISTFFGCRI  PPL+N  AR   AP SGG+L+IECSSRP KKATAHHMKTRPRKSQPWDI+RKPTVYPPLP+LPPDWT +S VSGDG+ EVASSI+ S
Subjt:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS

Query:  SSEP
           P
Subjt:  SSEP

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]5.6e-3678.64Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSISTFFG RI  PPLLNS A K AP SGGNL+IECSSRP KKATAHHMKTRPRKSQPWDIRRKPTVYPPLP LPPDWT++SS+S D   EVASSI+ S+
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEP
          P
Subjt:  SEP

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein7.2e-3779.81Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSISTF GC+I  PPLLNS A K AP S GNLLIECSSRP KKATAHHMKTRPRKSQPWDIRRKPTVYPPLP LPPDWTL+SSVSGD + E+A SIS S+
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEPV
          PV
Subjt:  SEPV

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic1.8e-3576.19Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSISTF GC+I  PPLLNS A K AP SGGNL IECSSRP KKATAHHMKTRP+KSQPWDIRRKPTVYPPLP LPPDWTL+SSVSGD + E+   +S SS
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEPVP
        S   P
Subjt:  SEPVP

A0A5A7TB88 50S ribosomal protein 61.8e-3576.19Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSISTF GC+I  PPLLNS A K AP SGGNL IECSSRP KKATAHHMKTRP+KSQPWDIRRKPTVYPPLP LPPDWTL+SSVSGD + E+   +S SS
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEPVP
        S   P
Subjt:  SEPVP

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.0e-3577.67Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS
        MSIST+FG RI  PPLLNS A K AP SGGNL+IECSSRP KKATAHHMKTRPRKSQPWDIRRKPTVYPPLP LPPDWT +SS+S D   EVASSI+ S+
Subjt:  MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISS

Query:  SEP
          P
Subjt:  SEP

A0A6J1FKF7 50S ribosomal protein 6, chloroplastic-like1.8e-3575.96Show/hide
Query:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS
        MSISTFFGCRI  PPL+   AR   AP SGG+L+IECSSRP KKATAHHMKTRPRKSQPWDI+RKPTVYPPLP+LPPDWT +S VSGDG+ EVASSI+ S
Subjt:  MSISTFFGCRIPAPPLLNSPARK-PAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISIS

Query:  SSEP
           P
Subjt:  SSEP

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic5.5e-1850.47Show/hide
Query:  SISTFFGCRIPAPP---LLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISI
        S+S+ FGC +   P   L N   R    S+ G LLIECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLP LPPD+T++  +  D     AS++  
Subjt:  SISTFFGCRIPAPP---LLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISI

Query:  SSSEPVP
        +   P P
Subjt:  SSSEPVP

P82411 50S ribosomal protein 6, chloroplastic2.9e-1948.67Show/hide
Query:  MSISTFFGCRIPAPP------LLNSPARKPAPSSGGN-----LLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGD
        MS+S  FG R+   P       ++    K  PS+GG+     + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLP LP +WT++SS   + D
Subjt:  MSISTFFGCRIPAPP------LLNSPARKPAPSSGGN-----LLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGD

Query:  SEVASSISISSSE
        S  +SS + SS+E
Subjt:  SEVASSISISSSE

Q9FKP0 50S ribosomal protein 6, chloroplastic1.5e-1849.06Show/hide
Query:  MSISTFFG---CRIPAPPLLNSPARKPAPSSGGNL--LIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASS
        MS+S  FG     + A P+L    + P   +GG L  +IECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLP LP +W+  +  S DG +  A+ 
Subjt:  MSISTFFG---CRIPAPPLLNSPARKPAPSSGGNL--LIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASS

Query:  ISISSS
          +S +
Subjt:  ISISSS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 61.0e-1949.06Show/hide
Query:  MSISTFFG---CRIPAPPLLNSPARKPAPSSGGNL--LIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASS
        MS+S  FG     + A P+L    + P   +GG L  +IECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLP LP +W+  +  S DG +  A+ 
Subjt:  MSISTFFG---CRIPAPPLLNSPARKPAPSSGGNL--LIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASS

Query:  ISISSS
          +S +
Subjt:  ISISSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCGACCTTCTTCGGCTGCCGGATTCCGGCTCCGCCATTGCTGAATTCACCGGCAAGAAAACCAGCTCCAAGCTCCGGCGGGAATTTGTTGATCGAGTGCTC
GTCGAGGCCGACGAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGCCGGAAGCCGACGGTGTATCCTCCTCTGCCGTCTC
TTCCGCCGGACTGGACCTTGATTTCGTCGGTCTCCGGCGACGGCGATTCGGAGGTAGCCTCTTCGATTTCAATTTCTTCGTCTGAACCAGTACCGGAGTAA
mRNA sequenceShow/hide mRNA sequence
GTGAATTTCAAATTTTTTTTAGCCAAGCTTAAATGTATTTAATATTAAAATGTCTAAATTCTTATTTTTAAATTCATAGTTCTAACCTTCTTTTTTTTTTTTTTGCAAAC
TTTTACACCTAAGCTTAAAAGTTATAATTTACCCCTACTAATTCAAAGTTGTCAATTTGGTCGTACGATTTCCGAACACAGAGCCCATGGGCCATTAATATGAGAAACGG
TCCAATAAAATTAAAACGATTTTTCATAAAATTTTCCATCGACAATAAAACCGAAGAGATAACGAATGTAATCCCAATCGATAGGTTACCATTTCCATTCTCACAATCCT
TGAAGAAACCATGTCGATTTCGACCTTCTTCGGCTGCCGGATTCCGGCTCCGCCATTGCTGAATTCACCGGCAAGAAAACCAGCTCCAAGCTCCGGCGGGAATTTGTTGA
TCGAGTGCTCGTCGAGGCCGACGAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGCCGGAAGCCGACGGTGTATCCTCCT
CTGCCGTCTCTTCCGCCGGACTGGACCTTGATTTCGTCGGTCTCCGGCGACGGCGATTCGGAGGTAGCCTCTTCGATTTCAATTTCTTCGTCTGAACCAGTACCGGAGTA
ACCCTAGGCTGGTAACTCCCTCCGTGTTTCTTATTCTGTGTTATTTTGTATCATCGATGTTTTAATTAGACTTTTGTTGAGGAATTGTGTAGCTTTTCAGTCTCTGTTGA
ATCAATACTGTTATGATTCTGTTGATGAAATGCATCTTGGAATCTAGATCTGGTTGTTGTTTGTTTATTGCATTTTGAATTGGCTTTGTTTCGAAGGATCGAGAATTCGC
GGAATTATTCGATTGATTTTATCTAATTACTTCAGTTGTTGTTTACATGTCGAATTAGGTTGGCTTTGTTTTCACTCTCAAGCTGTTTGGGGTTTGATTACAAAGCAGTT
TTTCGATCCCATAGCCATTGAACTGGATTGTTTTGTTTGTATATATGTTCTTCGTTTTCCCTCTTTTTTGGTTTATATGTTCTTCCTTTAATCTTATTTGGAAATTGATG
CTTTTGA
Protein sequenceShow/hide protein sequence
MSISTFFGCRIPAPPLLNSPARKPAPSSGGNLLIECSSRPTKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPSLPPDWTLISSVSGDGDSEVASSISISSSEPVPE