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Sed0015200 (gene) of Chayote v1 genome

Gene IDSed0015200
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG14:5265183..5267976
RNA-Seq ExpressionSed0015200
SyntenySed0015200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2622047.1 hypothetical protein D8674_024229 [Pyrus ussuriensis x Pyrus communis]2.0e-0949.33Show/hide
Query:  LFVCLILAAGDVEA--GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        L + ++ A+G   A  GRP S+ P   Q+G+    ++ FGTLGI C+CCD  GG+CTS +T SC NL C PWKQH
Subjt:  LFVCLILAAGDVEA--GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

KAG6595355.1 hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0946.51Show/hide
Query:  WNWKCLFVCLILAA---GDVEAG--RPFSIFPLKLQR-GFGSYNSEFFGTLGIECKCCDG-VGGKCTSDF-TASCFNLHCSPWKQH
        W W  + + L+ A    G V  G  R   + P+KL + GF +Y+S    TLGIECKCCD  +GGKC++ F  ASC NL CSPWK +
Subjt:  WNWKCLFVCLILAA---GDVEAG--RPFSIFPLKLQR-GFGSYNSEFFGTLGIECKCCDG-VGGKCTSDF-TASCFNLHCSPWKQH

PRQ43088.1 hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis]6.9e-1050.65Show/hide
Query:  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        L + L+  A +    VEA RP S+F    Q+G+    S+ FGTLGI C+CCDGVGG+C S +T SC +L C PWKQH
Subjt:  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

RXH81333.1 hypothetical protein DVH24_006158 [Malus domestica]2.0e-0954.24Show/hide
Query:  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        GRP S+ P   Q+G+    ++ FGTLGI C+CCDG GG+CTS +  SC  L C PWKQH
Subjt:  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

XP_003516905.1 uncharacterized protein LOC100806570 [Glycine max]1.1e-1046.99Show/hide
Query:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGVGG CTS +T SC NL CSPWK H
Subjt:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

TrEMBL top hitse value%identityAlignment
A0A0A0KXD1 Uncharacterized protein2.1e-2057.14Show/hide
Query:  MGFWNWKCLFVCLILAAGDVEAG--------RPFSIFP-LKLQRGF-GSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        MGF N+KCLF+  +L       G        RPFSI P LKLQ+GF G Y+S+ F T+GIECKCCD +GGKC+++FT SC NLHCSPWKQ+
Subjt:  MGFWNWKCLFVCLILAAGDVEAG--------RPFSIFP-LKLQRGF-GSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

A0A0B2SG43 Uncharacterized protein5.2e-1146.99Show/hide
Query:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGVGG CTS +T SC NL CSPWK H
Subjt:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

A0A2P6R9H6 Uncharacterized protein3.4e-1050.65Show/hide
Query:  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        L + L+  A +    VEA RP S+F    Q+G+    S+ FGTLGI C+CCDGVGG+C S +T SC +L C PWKQH
Subjt:  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

A0A498IJA5 PI31_Prot_N domain-containing protein9.8e-1054.24Show/hide
Query:  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        GRP S+ P   Q+G+    ++ FGTLGI C+CCDG GG+CTS +  SC  L C PWKQH
Subjt:  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

I1J716 Uncharacterized protein5.2e-1146.99Show/hide
Query:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
        MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGVGG CTS +T SC NL CSPWK H
Subjt:  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTTGGAATTGGAAGTGCTTGTTTGTTTGTTTGATTCTGGCTGCTGGAGATGTTGAAGCTGGTAGGCCATTTTCAATCTTCCCACTCAAGCTTCAGAGAGGTTT
TGGGAGCTATAATTCAGAGTTTTTTGGTACATTGGGTATTGAATGCAAATGTTGTGATGGGGTTGGAGGTAAATGCACAAGTGACTTCACTGCTTCTTGCTTTAATCTCC
ATTGCTCCCCTTGGAAACAACATTAA
mRNA sequenceShow/hide mRNA sequence
GTTGTATATTCCCACTTCCTTTTCCTTAATCATTCAATCAATAAACAATGGCTCTTCCAGAAGCCTAAAAGTAACATAATAATAAACATATCATTCCTGTGTGTGCTTCA
TTTTTTACTTCAATCCCAGATATAAAAAAACTCCATAATTTTAGTTAATTTCTTTCAATTTCTTCTTCTCTTAATCCTTTTTTTTCAAATGGGTTTTTGGAATTGGAAGT
GCTTGTTTGTTTGTTTGATTCTGGCTGCTGGAGATGTTGAAGCTGGTAGGCCATTTTCAATCTTCCCACTCAAGCTTCAGAGAGGTTTTGGGAGCTATAATTCAGAGTTT
TTTGGTACATTGGGTATTGAATGCAAATGTTGTGATGGGGTTGGAGGTAAATGCACAAGTGACTTCACTGCTTCTTGCTTTAATCTCCATTGCTCCCCTTGGAAACAACA
TTAAAACCAAATCCTATCTCTTTATTTCTCGGGTCAATAATATTTAGGGTGGAGAATTCGAACTCTTTTTATTGTAATTTTGAGTATATATAAATATATATTAATTAGTT
AATTATCTATGATCTTCATAGCATTTTTTGTTTTGTAGTATGTATATCTCTATAATTTTCTTATAAT
Protein sequenceShow/hide protein sequence
MGFWNWKCLFVCLILAAGDVEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH