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Sed0015217 (gene) of Chayote v1 genome

Gene IDSed0015217
OrganismSechium edule (Chayote v1)
DescriptionSWR1 complex subunit 6
Genome locationLG05:45638213..45641515
RNA-Seq ExpressionSed0015217
SyntenySed0015217
Gene Ontology termsGO:0043486 - histone exchange (biological process)
GO:0000812 - Swr1 complex (cellular component)
GO:0031491 - nucleosome binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010486.1 SWR1 complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-8394.77Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

XP_022943643.1 SWR1 complex subunit 6 [Cucurbita moschata]7.6e-8394.77Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

XP_022986949.1 SWR1 complex subunit 6 [Cucurbita maxima]1.3e-8294.19Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSY+KAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

XP_023512985.1 SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]7.6e-8394.77Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

XP_038901863.1 SWR1 complex subunit 6 [Benincasa hispida]3.8e-8295.35Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATN FRR SSR RKVAPKMVAALASSDNR QAALARLEALENDNAGVE VENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

TrEMBL top hitse value%identityAlignment
A0A0A0KH15 HIT-type domain-containing protein4.5e-8194.19Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRR SSRTRKVAPKMVAALASSDNR QAALARLEALENDNAGVE+VENI+DEDASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

A0A1S3CKL9 SWR1 complex subunit 62.9e-8093.02Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRR SSRTRKVAPKMVAALASSDNR QAALARLEALENDNAG+E+VENI+DEDASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEANLESLPPHVPSY KAAVGPPSSTSRRHFCTVCGF ASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

A0A6J1D2Z0 SWR1 complex subunit 6 isoform X17.7e-8193.02Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR QAALARLEALENDNAG+ELVENI+DEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEANLESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGF A+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

A0A6J1FTL5 SWR1 complex subunit 63.7e-8394.77Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

A0A6J1JHH9 SWR1 complex subunit 66.3e-8394.19Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRR SSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENI+DEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSY+KAAVGPPSSTSRRHFCTVCGF ASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

SwissProt top hitse value%identityAlignment
O43257 Zinc finger HIT domain-containing protein 13.3e-1235.33Show/hide
Query:  RRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELL
        +++S R++    + V   A+   R +    +LEALENDN      AG   +  +       DDD     +K++++G   K R           K F  LL
Subjt:  RRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELL

Query:  HEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF
         E NL       P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  HEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF

Q24JY4 Zinc finger HIT domain-containing protein 13.3e-1235.33Show/hide
Query:  RRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELL
        +++S R++    + V   A+   R +    +LEALENDN      AG   +  +       DDD     +K++++G   K R           K F  LL
Subjt:  RRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELL

Query:  HEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF
         E NL       P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  HEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF

Q54NW0 Zinc finger HIT domain-containing protein 1 homolog1.1e-1533.96Show/hide
Query:  SSRTRKVAPKMVAALASSDNRN---QAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEANL
        SS+ +    K     +  D RN   +   ARLE+L++DN    +    ++ED   +DDE   +     +K      R+ K  E K     F ++L ++ L
Subjt:  SSRTRKVAPKMVAALASSDNRN---QAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEANL

Query:  ESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRC
        E+ P HVP+Y+ +    PS    RHFC++CG++ +YTC +C  R+CS +C N HN+TRC
Subjt:  ESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRC

Q8R331 Zinc finger HIT domain-containing protein 11.3e-1339.42Show/hide
Query:  RLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRH
        +LEALENDN      AG   +  +       DDD     +K++++G   K R           K F  LL E NL +     P+YL A  GPP S  +R 
Subjt:  RLEALENDN------AGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRH

Query:  FCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF
        FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  FCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKF

Q9FHW2 SWR1 complex subunit 61.9e-6069.94Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR S+RTRKVA KM AAL S+DNR QAA+ARLEALENDN  +E+++  +DE+ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        +ELL EANLESLP HVP+YLKAAVGPPSS+SRR+FC+VCG++A Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA

Arabidopsis top hitse value%identityAlignment
AT5G37055.1 HIT-type Zinc finger family protein1.4e-6169.94Show/hide
Query:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR S+RTRKVA KM AAL S+DNR QAA+ARLEALENDN  +E+++  +DE+ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA
        +ELL EANLESLP HVP+YLKAAVGPPSS+SRR+FC+VCG++A Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACGATGCTACGAATTCATTTCGTCGCTCATCGAGCCGCACGCGGAAGGTCGCTCCTAAGATGGTTGCTGCCCTAGCGAGTAGCGATAATCGCAACCAGGCAGC
TCTTGCTCGTCTCGAAGCTCTGGAAAATGACAATGCGGGAGTGGAATTGGTAGAGAATATTGAGGACGAGGATGCATCTCTGGATGATGACGAGCAAGCATACATACAGA
AGCGGCAATCCAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCT
TTGCCTCCACATGTTCCATCATACTTAAAGGCAGCCGTTGGACCTCCAAGCTCTACCTCCCGTCGGCATTTCTGCACGGTTTGTGGTTTCGTTGCTAGCTACACGTGCAT
AAGATGTGGAATACGCTTTTGTTCAGGTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
CACATTTTTAGTGAAAAGTTAATGTAGCCGAATGTGGATCGGGCGCCTACATATTTGACAGTCTCCGGTTGTTTGAGAACGGTGAACATCGGCCGGAAGTTTGACCGGAC
TTACATTCCGCCGTTCTTCTTCTCCAAGTTCCTTCTAGGGTTTGATCTGTCTGTGCGGTTTTAGCAAGCCATGGATGACGATGCTACGAATTCATTTCGTCGCTCATCGA
GCCGCACGCGGAAGGTCGCTCCTAAGATGGTTGCTGCCCTAGCGAGTAGCGATAATCGCAACCAGGCAGCTCTTGCTCGTCTCGAAGCTCTGGAAAATGACAATGCGGGA
GTGGAATTGGTAGAGAATATTGAGGACGAGGATGCATCTCTGGATGATGACGAGCAAGCATACATACAGAAGCGGCAATCCAAGGGCACTAAGCGCAAAACTAGACAGGC
AAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCTTTGCCTCCACATGTTCCATCATACTTAAAGGCAGCCGTTG
GACCTCCAAGCTCTACCTCCCGTCGGCATTTCTGCACGGTTTGTGGTTTCGTTGCTAGCTACACGTGCATAAGATGTGGAATACGCTTTTGTTCAGGTCGTTGCCAGAAT
ATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTGATTGCTAGGAAATAGAGCCACCCTTAGTTTTGTAGATTTAATCAAACTCACTAAATCTCTTGTATGTTTCAA
TTTAGTTTTAACACTCAAAATTTCACGCTTCAGCCCCAAATCTTTTTTGAGCTTCTATCTCCAATGATTGTGCCGTAAGACCTTTGTTTGTTTAGATTTTATCTTCACAC
CAAATCTTTTATAATCACTCAAATTCTTCGTAACCACACCACATTCCCCCCCATATTCAAACTCTCCATAATAGTTCTAATAATATTTTGCTGTTAAAAAACGACTTCTC
TTTCTCAATTTCCACAGTTTGAGAATATTATTTAAAAGAAACAGAAAGAAAATCATGAGAAC
Protein sequenceShow/hide protein sequence
MDDDATNSFRRSSSRTRKVAPKMVAALASSDNRNQAALARLEALENDNAGVELVENIEDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLES
LPPHVPSYLKAAVGPPSSTSRRHFCTVCGFVASYTCIRCGIRFCSGRCQNIHNDTRCLKFVA